plugins/org.eclipse.jst.j2ee/archiveops/org/eclipse/jst/j2ee/internal/archive/operations/EARProjectSaveStrategyImpl.java - gerrit/jeetools/webtools.javaee - Git at Google

 /***************************************************************************************************
  * Copyright (c) 2003, 2004 IBM Corporation and others. All rights reserved. This program and the
  * accompanying materials are made available under the terms of the Eclipse Public License v1.0
  * which accompanies this distribution, and is available at
  * http://www.eclipse.org/legal/epl-v10.html
  *
  * Contributors: IBM Corporation - initial API and implementation
  **************************************************************************************************/
 package org.eclipse.jst.j2ee.internal.archive.operations;


 import java.io.FileNotFoundException;
 import java.io.IOException;
 import java.io.OutputStream;
 import java.util.ArrayList;
 import java.util.HashMap;
 import java.util.HashSet;
 import java.util.List;
 import java.util.Map;
 import java.util.Set;

 import org.eclipse.core.resources.IFile;
 import org.eclipse.core.resources.IFolder;
 import org.eclipse.core.resources.IProject;
 import org.eclipse.core.resources.IWorkspaceRoot;
 import org.eclipse.core.resources.ResourcesPlugin;
 import org.eclipse.core.runtime.CoreException;
 import org.eclipse.core.runtime.IPath;
 import org.eclipse.core.runtime.IProgressMonitor;
 import org.eclipse.core.runtime.SubProgressMonitor;
 import org.eclipse.emf.common.util.URI;
 import org.eclipse.emf.ecore.resource.URIConverter;
 import org.eclipse.jdt.core.IClasspathEntry;
 import org.eclipse.jdt.core.IJavaProject;
 import org.eclipse.jdt.core.JavaCore;
 import org.eclipse.jdt.core.JavaModelException;
 import org.eclipse.jem.util.emf.workbench.JavaProjectUtilities;
 import org.eclipse.jem.util.emf.workbench.WorkbenchURIConverter;
 import org.eclipse.jem.util.logger.proxy.Logger;
 import org.eclipse.jst.j2ee.application.internal.operations.EnterpriseApplicationImportDataModel;
 import org.eclipse.jst.j2ee.application.internal.operations.J2EEArtifactImportDataModel;
 import org.eclipse.jst.j2ee.commonarchivecore.internal.Archive;
 import org.eclipse.jst.j2ee.commonarchivecore.internal.EARFile;
 import org.eclipse.jst.j2ee.commonarchivecore.internal.File;
 import org.eclipse.jst.j2ee.commonarchivecore.internal.exception.SaveFailureException;
 import org.eclipse.jst.j2ee.commonarchivecore.internal.helpers.ArchiveConstants;
 import org.eclipse.jst.j2ee.commonarchivecore.internal.helpers.ArchiveManifest;
 import org.eclipse.jst.j2ee.commonarchivecore.internal.strategy.SaveStrategy;
 import org.eclipse.jst.j2ee.commonarchivecore.internal.strategy.SaveStrategyImpl;
 import org.eclipse.jst.j2ee.commonarchivecore.internal.strategy.ZipStreamSaveStrategyImpl;
 import org.eclipse.jst.j2ee.commonarchivecore.internal.util.ArchiveUtil;
 import org.eclipse.jst.j2ee.internal.earcreation.EAREditModel;
 import org.eclipse.jst.j2ee.internal.earcreation.EARNatureRuntime;
 import org.eclipse.jst.j2ee.internal.project.J2EEModuleNature;
 import org.eclipse.jst.j2ee.internal.project.J2EENature;

 public class EARProjectSaveStrategyImpl extends SaveStrategyImpl implements EARProjectSaveStrategy, IJ2EEImportExportConstants {
 	protected IProject project;
 	protected URIConverter earURIConverter;
 	protected EnterpriseApplicationImportDataModel dataModel;
 	protected IOverwriteHandler overwriteHandler;
 	protected IProgressMonitor monitor;
 	protected boolean includeProjectMetaFiles = false;
 	/**
 	 * Used to store the actual project names used to create projects for the modules; needed for
 	 * updating project class paths after all the projects have been saved
 	 */
 	protected Map createdProjectsMap;

 	public EARProjectSaveStrategyImpl(EnterpriseApplicationImportDataModel model) {
 		super();
 		this.dataModel = model;
 		project = dataModel.getProject();
 		setArchive(model.getEARFile());
 		includeProjectMetaFiles = model.getBooleanProperty(EnterpriseApplicationImportDataModel.PRESERVE_PROJECT_METADATA);
 		overwriteHandler = (IOverwriteHandler) model.getProperty(EnterpriseApplicationImportDataModel.OVERWRITE_HANDLER);
 		if (null != overwriteHandler) {
 			overwriteHandler.setEarSaveStrategy(this);
 		}
 		buildProjectsMap();
 	}

 	/**
 	 * Creates a Map mapping archive uris to projects for all archives in the ear that imported as
 	 * projects.
 	 */
 	private void buildProjectsMap() {
 		createdProjectsMap = new HashMap();
 		List createdProjectsList = dataModel.getProjectModels();
 		J2EEArtifactImportDataModel importDM = null;
 		Archive anArchive = null;
 		for (int i = 0; i < createdProjectsList.size(); i++) {
 			importDM = (J2EEArtifactImportDataModel) createdProjectsList.get(i);
 			anArchive = importDM.getArchiveFile();
 			createdProjectsMap.put(anArchive.getURI(), importDM.getProject());
 		}
 	}

 	protected void addFileToClasspath(IProject p, IFile file, List cp) {
 		if (!file.exists())
 			return;

 		//Assume the file also contains the source
 		IPath path = file.getFullPath();
 		IClasspathEntry entry = JavaCore.newLibraryEntry(path, path, null, true);
 		if (!cp.contains(entry))
 			cp.add(entry);
 	}

 	protected void addProjectToClasspath(IProject dependent, IProject prereq, List cp) {
 		IClasspathEntry entry = JavaCore.newProjectEntry(prereq.getFullPath(), true);
 		if (!cp.contains(entry))
 			cp.add(entry);
 	}

 	protected SaveStrategy createNestedSaveStrategy(Archive anArchive) throws java.io.IOException {
 		try {
 			if (earURIConverter == null)
 				getEARURIConverter();
 			OutputStream out = earURIConverter.createOutputStream(URI.createURI(anArchive.getURI()));
 			return new ZipStreamSaveStrategyImpl(out);
 		} catch (Exception ex) {
 			throw new IOException(ex.getLocalizedMessage());
 		}
 	}

 	protected EARFile getEARFile() {
 		return (EARFile) getArchive();
 	}

 	public org.eclipse.emf.ecore.resource.URIConverter getEARURIConverter() {

 		EARNatureRuntime ear = EARNatureRuntime.getRuntime(project);
 		earURIConverter = ear.getResourceSet().getURIConverter();
 		return earURIConverter;
 	}

 	protected java.io.OutputStream getOutputStreamForResource(org.eclipse.emf.ecore.resource.Resource aResource) throws java.io.IOException {
 		return null;
 	}

 	public void save() throws SaveFailureException {

 		saveFiles();
 		saveManifest();
 		saveMofResources();
 		monitor.subTask(EARArchiveOpsResourceHandler.getString("Updating_project_classpath_UI_")); //$NON-NLS-1$ = "Updating project classpaths..."
 		updateProjectClasspaths();

 	}

 	public void save(ArchiveManifest aManifest) throws SaveFailureException {
 		try {
 			EARNatureRuntime ear = EARNatureRuntime.getRuntime(project);
 			if (ear == null)
 				throw new SaveFailureException(EARArchiveOpsResourceHandler.getString("ARCHIVE_OPERATION_ProjectNature")); //$NON-NLS-1$
 			URIConverter wuc = ear.getResourceSet().getURIConverter();
 			OutputStream out = wuc.createOutputStream(URI.createURI(ArchiveConstants.MANIFEST_URI));
 			aManifest.write(out);
 			out.close();
 		} catch (IOException ioe) {
 			throw new SaveFailureException(EARArchiveOpsResourceHandler.getString("ARCHIVE_OPERATION_SaveManifest")); //$NON-NLS-1$
 		}
 	}

 	public void save(Archive anArchive) throws SaveFailureException {
 		monitor.subTask(anArchive.getURI());
 		saveArchiveAsJARInEAR(anArchive);
 	}

 	protected void saveArchiveAsJARInEAR(Archive anArchive) throws SaveFailureException {

 		try {
 			anArchive.save(createNestedSaveStrategy(anArchive));
 			monitor.worked(1);
 		} catch (IOException e) {
 			throw new SaveFailureException(anArchive.getURI(), e);
 		}
 	}

 	public void save(File aFile, java.io.InputStream in) throws SaveFailureException {
 		monitor.subTask(aFile.getURI());
 		try {
 			if (earURIConverter == null)
 				getEARURIConverter();
 			IFile iFile = ((WorkbenchURIConverter) earURIConverter).getOutputFileWithMappingApplied(aFile.getURI());
 			mkdirs(iFile.getFullPath(), ResourcesPlugin.getWorkspace().getRoot());
 			if (iFile.exists())
 				iFile.setContents(in, true, true, null);
 			else
 				iFile.create(in, true, null);
 			//OutputStream out = earURIConverter.createOutputStream(URI.createURI(aFile.getURI()));
 			//ArchiveUtil.copy(in, out);
 		} catch (Exception iox) {
 			throw new SaveFailureException(aFile.getURI(), iox);
 		}
 		monitor.worked(1);

 	}

 	protected void mkdirs(IPath newPath, IWorkspaceRoot root) throws CoreException {
 		if (newPath.segmentCount() <= 2)
 			return;
 		IPath parentPath = newPath.removeLastSegments(1);
 		IFolder folder = root.getFolder(parentPath);
 		if (!folder.exists()) {
 			mkdirs(parentPath, root);
 			folder.create(true, true, null);
 		}
 	}

 	protected SubProgressMonitor subMonitor() {
 		return new SubProgressMonitor(monitor, 10);
 	}

 	public void saveMofResource(org.eclipse.emf.ecore.resource.Resource aResource) throws SaveFailureException {
 		setEncoding(aResource);
 		try {
 			if (earURIConverter == null)
 				getEARURIConverter();
 			OutputStream out = null;
 			out = earURIConverter.createOutputStream(aResource.getURI());
 			aResource.save(out, new HashMap());
 			out.close();

 		} catch (Exception e) {
 			String errorString = EARArchiveOpsResourceHandler.getString("ARCHIVE_OPERATION_SaveMofResources"); //$NON-NLS-1$
 			throw new SaveFailureException(errorString, e);
 		}
 	}

 	public void setMonitor(org.eclipse.core.runtime.IProgressMonitor newMonitor) {
 		monitor = newMonitor;
 	}

 	public void setProject(org.eclipse.core.resources.IProject newProject) {
 		project = newProject;
 	}

 	protected boolean shouldSave(File aFile) {
 		if (aFile.isArchive()) {
 			if (dataModel.handlesArchive((Archive) aFile)) {
 				return false;
 			}
 			return getFilter().shouldSave(aFile.getURI(), getArchive());
 		}
 		return super.shouldSave(aFile);
 	}

 	protected boolean isProjectMetaFile(String uri) {
 		return PROJECT_FILE_URI.equals(uri) || EAREditModel.MODULE_MAP_URI.equals(uri);
 	}

 	protected boolean shouldSave(String uri) {
 		if (isProjectMetaFile(uri))
 			return includeProjectMetaFiles;
 		if (shouldAlwaysExclude(uri)) {
 			return false;
 		}

 		if (overwriteHandler != null) {
 			if (overwriteHandler.isOverwriteNone())
 				return false;
 			return ((super.shouldSave(uri)) && (!overwriteHandler.isOverwriteResources()) && (!overwriteHandler.isOverwriteAll()) && (overwriteHandler.shouldOverwrite(uri)));
 		}
 		return true;
 	}

 	//TODO move up and use correct Strings
 	private boolean shouldAlwaysExclude(String uri) {
 		if (uri.equals(".runtime")) { //$NON-NLS-1$
 			return true;
 		}
 		return false;
 	}

 	/*
 	 * Parse the manifest of the module file; for each cp entry 1) cananonicalize to a uri that
 	 * looks like the entry in the ear 2) If the ear contains a file with that uri (the entry is
 	 * valid) a) If the file is another was blown out to a project, add a cp entry for a referenced
 	 * project b) otherwise, add a cp entry that points to the file in the ear project, and cp
 	 * entries for all prereqs
 	 */
 	protected void updateProjectClasspath(Archive anArchive, IProject p) {

 		String message = EARArchiveOpsResourceHandler.getString("Updating_project_classpath_UI_") + p.getName(); //$NON-NLS-1$ = "Updating project classpaths..."
 		monitor.subTask(message);
 		List projectCpEntries = new ArrayList();
 		Set visited = new HashSet();
 		traverseClasspaths(p, anArchive, projectCpEntries, visited);

 		try {
 			if (!projectCpEntries.isEmpty())
 				JavaProjectUtilities.appendJavaClassPath(p, projectCpEntries);
 			JavaProjectUtilities.forceClasspathReload(p);
 		} catch (JavaModelException ex) {
 			org.eclipse.jem.util.logger.proxy.Logger.getLogger().logError(ex);
 		}

 	}

 	/*
 	 * If you have a dependency to a JAR in the EAR project, and the JAR depends on another JAR in
 	 * the EAR; you want to compile cleanly after import, so you need both those JARs on your build
 	 * path
 	 */
 	protected void traverseClasspaths(IProject p, Archive anArchive, List projectCpEntries, Set visitedArchives) {

 		visitedArchives.add(anArchive);
 		String[] manifestCpEntries = anArchive.getManifest().getClassPathTokenized();
 		for (int i = 0; i < manifestCpEntries.length; i++) {
 			String uri = ArchiveUtil.deriveEARRelativeURI(manifestCpEntries[i], anArchive);
 			//ensure the entry is valid or skip to the next
 			if (uri == null)
 				continue;
 			File aFile = null;
 			try {
 				aFile = dataModel.getEARFile().getFile(uri);
 			} catch (FileNotFoundException notThere) {
 			}
 			if (aFile == null || !aFile.isArchive() || visitedArchives.contains(aFile))
 				continue;
 			Archive depArchive = (Archive) aFile;

 			IProject prereq = (IProject) createdProjectsMap.get(uri);

 			if (prereq != null) {
 				addProjectToClasspath(p, prereq, projectCpEntries);
 			} else {
 				addFileToClasspath(p, project.getFile(uri), projectCpEntries);
 				traverseClasspaths(p, depArchive, projectCpEntries, visitedArchives);
 			}
 		}
 	}

 	protected void updateProjectClasspaths() {
 		//We're preserving the original classpath
 		if (includeProjectMetaFiles)
 			return;
 		List jarFiles = getEARFile().getArchiveFiles();
 		for (int i = 0; i < jarFiles.size(); i++) {
 			Archive anArchive = (Archive) jarFiles.get(i);
 			IProject p = (IProject) createdProjectsMap.get(anArchive.getURI());
 			if (p != null)
 				updateProjectClasspath(anArchive, p);
 		}
 	}

 	protected void ensureBinary(Archive anArchive, IProject p) {
 		//TODO
 		//        if (!getImportConfiguration().isBinary(anArchive))
 		//            return;
 		J2EEModuleNature nature = (J2EEModuleNature) J2EENature.getRegisteredRuntime(p);
 		//Right now WARs are not optimized
 		if (nature != null && !nature.canBeBinary())
 			return;
 		IJavaProject javaP = JavaProjectUtilities.getJavaProject(p);
 		if (javaP == null)
 			return;
 		List newCp = new ArrayList();
 		try {
 			IClasspathEntry[] entries = javaP.getRawClasspath();
 			for (int i = 0; i < entries.length; i++) {
 				IClasspathEntry entry = entries[i];
 				if (entry.getEntryKind() != IClasspathEntry.CPE_SOURCE)
 					newCp.add(entry);
 			}
 			entries = (IClasspathEntry[]) newCp.toArray(new IClasspathEntry[newCp.size()]);
 			javaP.setRawClasspath(entries, new SubProgressMonitor(monitor, 1));
 		} catch (JavaModelException ex) {
 			Logger.getLogger().logError(ex);
 		}
 	}
 }
	/***************************************************************************************************
	* Copyright (c) 2003, 2004 IBM Corporation and others. All rights reserved. This program and the
	* accompanying materials are made available under the terms of the Eclipse Public License v1.0
	* which accompanies this distribution, and is available at
	* http://www.eclipse.org/legal/epl-v10.html
	*
	* Contributors: IBM Corporation - initial API and implementation
	**************************************************************************************************/
	package org.eclipse.jst.j2ee.internal.archive.operations;


	import java.io.FileNotFoundException;
	import java.io.IOException;
	import java.io.OutputStream;
	import java.util.ArrayList;
	import java.util.HashMap;
	import java.util.HashSet;
	import java.util.List;
	import java.util.Map;
	import java.util.Set;

	import org.eclipse.core.resources.IFile;
	import org.eclipse.core.resources.IFolder;
	import org.eclipse.core.resources.IProject;
	import org.eclipse.core.resources.IWorkspaceRoot;
	import org.eclipse.core.resources.ResourcesPlugin;
	import org.eclipse.core.runtime.CoreException;
	import org.eclipse.core.runtime.IPath;
	import org.eclipse.core.runtime.IProgressMonitor;
	import org.eclipse.core.runtime.SubProgressMonitor;
	import org.eclipse.emf.common.util.URI;
	import org.eclipse.emf.ecore.resource.URIConverter;
	import org.eclipse.jdt.core.IClasspathEntry;
	import org.eclipse.jdt.core.IJavaProject;
	import org.eclipse.jdt.core.JavaCore;
	import org.eclipse.jdt.core.JavaModelException;
	import org.eclipse.jem.util.emf.workbench.JavaProjectUtilities;
	import org.eclipse.jem.util.emf.workbench.WorkbenchURIConverter;
	import org.eclipse.jem.util.logger.proxy.Logger;
	import org.eclipse.jst.j2ee.application.internal.operations.EnterpriseApplicationImportDataModel;
	import org.eclipse.jst.j2ee.application.internal.operations.J2EEArtifactImportDataModel;
	import org.eclipse.jst.j2ee.commonarchivecore.internal.Archive;
	import org.eclipse.jst.j2ee.commonarchivecore.internal.EARFile;
	import org.eclipse.jst.j2ee.commonarchivecore.internal.File;
	import org.eclipse.jst.j2ee.commonarchivecore.internal.exception.SaveFailureException;
	import org.eclipse.jst.j2ee.commonarchivecore.internal.helpers.ArchiveConstants;
	import org.eclipse.jst.j2ee.commonarchivecore.internal.helpers.ArchiveManifest;
	import org.eclipse.jst.j2ee.commonarchivecore.internal.strategy.SaveStrategy;
	import org.eclipse.jst.j2ee.commonarchivecore.internal.strategy.SaveStrategyImpl;
	import org.eclipse.jst.j2ee.commonarchivecore.internal.strategy.ZipStreamSaveStrategyImpl;
	import org.eclipse.jst.j2ee.commonarchivecore.internal.util.ArchiveUtil;
	import org.eclipse.jst.j2ee.internal.earcreation.EAREditModel;
	import org.eclipse.jst.j2ee.internal.earcreation.EARNatureRuntime;
	import org.eclipse.jst.j2ee.internal.project.J2EEModuleNature;
	import org.eclipse.jst.j2ee.internal.project.J2EENature;

	public class EARProjectSaveStrategyImpl extends SaveStrategyImpl implements EARProjectSaveStrategy, IJ2EEImportExportConstants {
	protected IProject project;
	protected URIConverter earURIConverter;
	protected EnterpriseApplicationImportDataModel dataModel;
	protected IOverwriteHandler overwriteHandler;
	protected IProgressMonitor monitor;
	protected boolean includeProjectMetaFiles = false;
	/**
	* Used to store the actual project names used to create projects for the modules; needed for
	* updating project class paths after all the projects have been saved
	*/
	protected Map createdProjectsMap;

	public EARProjectSaveStrategyImpl(EnterpriseApplicationImportDataModel model) {
	super();
	this.dataModel = model;
	project = dataModel.getProject();
	setArchive(model.getEARFile());
	includeProjectMetaFiles = model.getBooleanProperty(EnterpriseApplicationImportDataModel.PRESERVE_PROJECT_METADATA);
	overwriteHandler = (IOverwriteHandler) model.getProperty(EnterpriseApplicationImportDataModel.OVERWRITE_HANDLER);
	if (null != overwriteHandler) {
	overwriteHandler.setEarSaveStrategy(this);
	}
	buildProjectsMap();
	}

	/**
	* Creates a Map mapping archive uris to projects for all archives in the ear that imported as
	* projects.
	*/
	private void buildProjectsMap() {
	createdProjectsMap = new HashMap();
	List createdProjectsList = dataModel.getProjectModels();
	J2EEArtifactImportDataModel importDM = null;
	Archive anArchive = null;
	for (int i = 0; i < createdProjectsList.size(); i++) {
	importDM = (J2EEArtifactImportDataModel) createdProjectsList.get(i);
	anArchive = importDM.getArchiveFile();
	createdProjectsMap.put(anArchive.getURI(), importDM.getProject());
	}
	}

	protected void addFileToClasspath(IProject p, IFile file, List cp) {
	if (!file.exists())
	return;

	//Assume the file also contains the source
	IPath path = file.getFullPath();
	IClasspathEntry entry = JavaCore.newLibraryEntry(path, path, null, true);
	if (!cp.contains(entry))
	cp.add(entry);
	}

	protected void addProjectToClasspath(IProject dependent, IProject prereq, List cp) {
	IClasspathEntry entry = JavaCore.newProjectEntry(prereq.getFullPath(), true);
	if (!cp.contains(entry))
	cp.add(entry);
	}

	protected SaveStrategy createNestedSaveStrategy(Archive anArchive) throws java.io.IOException {
	try {
	if (earURIConverter == null)
	getEARURIConverter();
	OutputStream out = earURIConverter.createOutputStream(URI.createURI(anArchive.getURI()));
	return new ZipStreamSaveStrategyImpl(out);
	} catch (Exception ex) {
	throw new IOException(ex.getLocalizedMessage());
	}
	}

	protected EARFile getEARFile() {
	return (EARFile) getArchive();
	}

	public org.eclipse.emf.ecore.resource.URIConverter getEARURIConverter() {

	EARNatureRuntime ear = EARNatureRuntime.getRuntime(project);
	earURIConverter = ear.getResourceSet().getURIConverter();
	return earURIConverter;
	}

	protected java.io.OutputStream getOutputStreamForResource(org.eclipse.emf.ecore.resource.Resource aResource) throws java.io.IOException {
	return null;
	}

	public void save() throws SaveFailureException {

	saveFiles();
	saveManifest();
	saveMofResources();
	monitor.subTask(EARArchiveOpsResourceHandler.getString("Updating_project_classpath_UI_")); //$NON-NLS-1$ = "Updating project classpaths..."
	updateProjectClasspaths();

	}

	public void save(ArchiveManifest aManifest) throws SaveFailureException {
	try {
	EARNatureRuntime ear = EARNatureRuntime.getRuntime(project);
	if (ear == null)
	throw new SaveFailureException(EARArchiveOpsResourceHandler.getString("ARCHIVE_OPERATION_ProjectNature")); //$NON-NLS-1$
	URIConverter wuc = ear.getResourceSet().getURIConverter();
	OutputStream out = wuc.createOutputStream(URI.createURI(ArchiveConstants.MANIFEST_URI));
	aManifest.write(out);
	out.close();
	} catch (IOException ioe) {
	throw new SaveFailureException(EARArchiveOpsResourceHandler.getString("ARCHIVE_OPERATION_SaveManifest")); //$NON-NLS-1$
	}
	}

	public void save(Archive anArchive) throws SaveFailureException {
	monitor.subTask(anArchive.getURI());
	saveArchiveAsJARInEAR(anArchive);
	}

	protected void saveArchiveAsJARInEAR(Archive anArchive) throws SaveFailureException {

	try {
	anArchive.save(createNestedSaveStrategy(anArchive));
	monitor.worked(1);
	} catch (IOException e) {
	throw new SaveFailureException(anArchive.getURI(), e);
	}
	}

	public void save(File aFile, java.io.InputStream in) throws SaveFailureException {
	monitor.subTask(aFile.getURI());
	try {
	if (earURIConverter == null)
	getEARURIConverter();
	IFile iFile = ((WorkbenchURIConverter) earURIConverter).getOutputFileWithMappingApplied(aFile.getURI());
	mkdirs(iFile.getFullPath(), ResourcesPlugin.getWorkspace().getRoot());
	if (iFile.exists())
	iFile.setContents(in, true, true, null);
	else
	iFile.create(in, true, null);
	//OutputStream out = earURIConverter.createOutputStream(URI.createURI(aFile.getURI()));
	//ArchiveUtil.copy(in, out);
	} catch (Exception iox) {
	throw new SaveFailureException(aFile.getURI(), iox);
	}
	monitor.worked(1);

	}

	protected void mkdirs(IPath newPath, IWorkspaceRoot root) throws CoreException {
	if (newPath.segmentCount() <= 2)
	return;
	IPath parentPath = newPath.removeLastSegments(1);
	IFolder folder = root.getFolder(parentPath);
	if (!folder.exists()) {
	mkdirs(parentPath, root);
	folder.create(true, true, null);
	}
	}

	protected SubProgressMonitor subMonitor() {
	return new SubProgressMonitor(monitor, 10);
	}

	public void saveMofResource(org.eclipse.emf.ecore.resource.Resource aResource) throws SaveFailureException {
	setEncoding(aResource);
	try {
	if (earURIConverter == null)
	getEARURIConverter();
	OutputStream out = null;
	out = earURIConverter.createOutputStream(aResource.getURI());
	aResource.save(out, new HashMap());
	out.close();

	} catch (Exception e) {
	String errorString = EARArchiveOpsResourceHandler.getString("ARCHIVE_OPERATION_SaveMofResources"); //$NON-NLS-1$
	throw new SaveFailureException(errorString, e);
	}
	}

	public void setMonitor(org.eclipse.core.runtime.IProgressMonitor newMonitor) {
	monitor = newMonitor;
	}

	public void setProject(org.eclipse.core.resources.IProject newProject) {
	project = newProject;
	}

	protected boolean shouldSave(File aFile) {
	if (aFile.isArchive()) {
	if (dataModel.handlesArchive((Archive) aFile)) {
	return false;
	}
	return getFilter().shouldSave(aFile.getURI(), getArchive());
	}
	return super.shouldSave(aFile);
	}

	protected boolean isProjectMetaFile(String uri) {
	return PROJECT_FILE_URI.equals(uri) \|\| EAREditModel.MODULE_MAP_URI.equals(uri);
	}

	protected boolean shouldSave(String uri) {
	if (isProjectMetaFile(uri))
	return includeProjectMetaFiles;
	if (shouldAlwaysExclude(uri)) {
	return false;
	}

	if (overwriteHandler != null) {
	if (overwriteHandler.isOverwriteNone())
	return false;
	return ((super.shouldSave(uri)) && (!overwriteHandler.isOverwriteResources()) && (!overwriteHandler.isOverwriteAll()) && (overwriteHandler.shouldOverwrite(uri)));
	}
	return true;
	}

	//TODO move up and use correct Strings
	private boolean shouldAlwaysExclude(String uri) {
	if (uri.equals(".runtime")) { //$NON-NLS-1$
	return true;
	}
	return false;
	}

	/*
	* Parse the manifest of the module file; for each cp entry 1) cananonicalize to a uri that
	* looks like the entry in the ear 2) If the ear contains a file with that uri (the entry is
	* valid) a) If the file is another was blown out to a project, add a cp entry for a referenced
	* project b) otherwise, add a cp entry that points to the file in the ear project, and cp
	* entries for all prereqs
	*/
	protected void updateProjectClasspath(Archive anArchive, IProject p) {

	String message = EARArchiveOpsResourceHandler.getString("Updating_project_classpath_UI_") + p.getName(); //$NON-NLS-1$ = "Updating project classpaths..."
	monitor.subTask(message);
	List projectCpEntries = new ArrayList();
	Set visited = new HashSet();
	traverseClasspaths(p, anArchive, projectCpEntries, visited);

	try {
	if (!projectCpEntries.isEmpty())
	JavaProjectUtilities.appendJavaClassPath(p, projectCpEntries);
	JavaProjectUtilities.forceClasspathReload(p);
	} catch (JavaModelException ex) {
	org.eclipse.jem.util.logger.proxy.Logger.getLogger().logError(ex);
	}

	}

	/*
	* If you have a dependency to a JAR in the EAR project, and the JAR depends on another JAR in
	* the EAR; you want to compile cleanly after import, so you need both those JARs on your build
	* path
	*/
	protected void traverseClasspaths(IProject p, Archive anArchive, List projectCpEntries, Set visitedArchives) {

	visitedArchives.add(anArchive);
	String[] manifestCpEntries = anArchive.getManifest().getClassPathTokenized();
	for (int i = 0; i < manifestCpEntries.length; i++) {
	String uri = ArchiveUtil.deriveEARRelativeURI(manifestCpEntries[i], anArchive);
	//ensure the entry is valid or skip to the next
	if (uri == null)
	continue;
	File aFile = null;
	try {
	aFile = dataModel.getEARFile().getFile(uri);
	} catch (FileNotFoundException notThere) {
	}
	if (aFile == null \|\| !aFile.isArchive() \|\| visitedArchives.contains(aFile))
	continue;
	Archive depArchive = (Archive) aFile;

	IProject prereq = (IProject) createdProjectsMap.get(uri);

	if (prereq != null) {
	addProjectToClasspath(p, prereq, projectCpEntries);
	} else {
	addFileToClasspath(p, project.getFile(uri), projectCpEntries);
	traverseClasspaths(p, depArchive, projectCpEntries, visitedArchives);
	}
	}
	}

	protected void updateProjectClasspaths() {
	//We're preserving the original classpath
	if (includeProjectMetaFiles)
	return;
	List jarFiles = getEARFile().getArchiveFiles();
	for (int i = 0; i < jarFiles.size(); i++) {
	Archive anArchive = (Archive) jarFiles.get(i);
	IProject p = (IProject) createdProjectsMap.get(anArchive.getURI());
	if (p != null)
	updateProjectClasspath(anArchive, p);
	}
	}

	protected void ensureBinary(Archive anArchive, IProject p) {
	//TODO
	// if (!getImportConfiguration().isBinary(anArchive))
	// return;
	J2EEModuleNature nature = (J2EEModuleNature) J2EENature.getRegisteredRuntime(p);
	//Right now WARs are not optimized
	if (nature != null && !nature.canBeBinary())
	return;
	IJavaProject javaP = JavaProjectUtilities.getJavaProject(p);
	if (javaP == null)
	return;
	List newCp = new ArrayList();
	try {
	IClasspathEntry[] entries = javaP.getRawClasspath();
	for (int i = 0; i < entries.length; i++) {
	IClasspathEntry entry = entries[i];
	if (entry.getEntryKind() != IClasspathEntry.CPE_SOURCE)
	newCp.add(entry);
	}
	entries = (IClasspathEntry[]) newCp.toArray(new IClasspathEntry[newCp.size()]);
	javaP.setRawClasspath(entries, new SubProgressMonitor(monitor, 1));
	} catch (JavaModelException ex) {
	Logger.getLogger().logError(ex);
	}
	}
	}