diff --git a/bundles/org.eclipse.compare.win32/.settings/.api_filters b/bundles/org.eclipse.compare.win32/.settings/.api_filters
deleted file mode 100644
index a7559c0..0000000
--- a/bundles/org.eclipse.compare.win32/.settings/.api_filters
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<component id="org.eclipse.compare.win32" version="2">
-    <resource path="META-INF/MANIFEST.MF">
-        <filter comment="Bug 516457: Many of plug-ins need a version increase" id="926941240">
-            <message_arguments>
-                <message_argument value="1.2.0"/>
-                <message_argument value="1.1.0"/>
-            </message_arguments>
-        </filter>
-    </resource>
-</component>
diff --git a/bundles/org.eclipse.compare.win32/META-INF/MANIFEST.MF b/bundles/org.eclipse.compare.win32/META-INF/MANIFEST.MF
index 4a5be81..124efe4 100644
--- a/bundles/org.eclipse.compare.win32/META-INF/MANIFEST.MF
+++ b/bundles/org.eclipse.compare.win32/META-INF/MANIFEST.MF
@@ -2,7 +2,7 @@
 Bundle-ManifestVersion: 2
 Bundle-Name: %pluginName
 Bundle-SymbolicName: org.eclipse.compare.win32;singleton:=true
-Bundle-Version: 1.2.300.qualifier
+Bundle-Version: 1.2.400.qualifier
 Bundle-Vendor: %providerName
 Bundle-RequiredExecutionEnvironment: JavaSE-1.8
 Eclipse-PlatformFilter: (osgi.os=win32)
diff --git a/bundles/org.eclipse.compare.win32/pom.xml b/bundles/org.eclipse.compare.win32/pom.xml
index 59e3f7f..5de9fc2 100644
--- a/bundles/org.eclipse.compare.win32/pom.xml
+++ b/bundles/org.eclipse.compare.win32/pom.xml
@@ -19,7 +19,7 @@
   </parent>
   <groupId>org.eclipse.compare</groupId>
   <artifactId>org.eclipse.compare.win32</artifactId>
-  <version>1.2.300-SNAPSHOT</version>
+  <version>1.2.400-SNAPSHOT</version>
   <packaging>eclipse-plugin</packaging>
 
   <build>
diff --git a/bundles/org.eclipse.compare/.settings/.api_filters b/bundles/org.eclipse.compare/.settings/.api_filters
deleted file mode 100644
index be062b1..0000000
--- a/bundles/org.eclipse.compare/.settings/.api_filters
+++ /dev/null
@@ -1,29 +0,0 @@
-<?xml version="1.0" encoding="UTF-8" standalone="no"?>
-<component id="org.eclipse.compare" version="2">
-    <resource path="compare/org/eclipse/compare/ICompareFilter.java" type="org.eclipse.compare.ICompareFilter">
-        <filter comment="Workaround for bug 411257: .api_description files in Kepler release do not contain @noreference restrictions" id="406052990">
-            <message_arguments>
-                <message_argument value="org.eclipse.compare.ICompareFilter"/>
-                <message_argument value="canCacheFilteredRegions()"/>
-            </message_arguments>
-        </filter>
-        <filter comment="Workaround for bug 411257: .api_description files in Kepler release do not contain @noreference restrictions" id="406052990">
-            <message_arguments>
-                <message_argument value="org.eclipse.compare.ICompareFilter"/>
-                <message_argument value="getFilteredRegions(HashMap)"/>
-            </message_arguments>
-        </filter>
-        <filter comment="Workaround for bug 411257: .api_description files in Kepler release do not contain @noreference restrictions" id="406052990">
-            <message_arguments>
-                <message_argument value="org.eclipse.compare.ICompareFilter"/>
-                <message_argument value="isEnabledInitially()"/>
-            </message_arguments>
-        </filter>
-        <filter comment="Workaround for bug 411257: .api_description files in Kepler release do not contain @noreference restrictions" id="406052990">
-            <message_arguments>
-                <message_argument value="org.eclipse.compare.ICompareFilter"/>
-                <message_argument value="setInput(Object, Object, Object, Object)"/>
-            </message_arguments>
-        </filter>
-    </resource>
-</component>
diff --git a/bundles/org.eclipse.team.core/.settings/.api_filters b/bundles/org.eclipse.team.core/.settings/.api_filters
deleted file mode 100644
index 2562537..0000000
--- a/bundles/org.eclipse.team.core/.settings/.api_filters
+++ /dev/null
@@ -1,10 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?><component id="org.eclipse.team.core" version="2">
-    <resource path="src/org/eclipse/team/core/Team.java" type="org.eclipse.team.core.Team">
-        <filter id="338944126">
-            <message_arguments>
-                <message_argument value="org.eclipse.team.core.Team"/>
-                <message_argument value="getBundleImporters()"/>
-            </message_arguments>
-        </filter>
-    </resource>
-</component>
\ No newline at end of file