update/org.eclipse.update.core/jarprocessor/org/eclipse/update/internal/jarprocessor/JarProcessor.java - platform/eclipse.platform - Git at Google

 /*******************************************************************************
  * Copyright (c) 2006, 2007 IBM Corporation and others.
  * All rights reserved. This program and the accompanying materials
  * are made available under the terms of the Eclipse Public License v1.0
  * which accompanies this distribution, and is available at
  * http://www.eclipse.org/legal/epl-v10.html
  *
  * Contributors:
  *     IBM - Initial API and implementation
  *******************************************************************************/
 package org.eclipse.update.internal.jarprocessor;

 import java.io.*;
 import java.util.*;
 import java.util.jar.*;

 /**
  * @author aniefer@ca.ibm.com
  *
  */
 public class JarProcessor {
 	private List steps = new ArrayList();
 	private String workingDirectory = ""; //$NON-NLS-1$
 	private int depth = -1;
 	private boolean verbose = false;
 	private boolean processAll = false;
 	private LinkedList containingInfs = new LinkedList();

 	static public JarProcessor getUnpackProcessor(Properties properties) {
 		if (!canPerformUnpack())
 			throw new UnsupportedOperationException();
 		JarProcessor processor = new JarProcessor();
 		processor.addProcessStep(new UnpackStep(properties));
 		return processor;
 	}

 	static public JarProcessor getPackProcessor(Properties properties) {
 		if (!canPerformPack())
 			throw new UnsupportedOperationException();
 		JarProcessor processor = new JarProcessor();
 		processor.addProcessStep(new PackStep(properties));
 		return processor;
 	}

 	static public boolean canPerformPack() {
 		return PackStep.canPack();
 	}

 	static public boolean canPerformUnpack() {
 		return UnpackStep.canUnpack();
 	}

 	public String getWorkingDirectory() {
 		return workingDirectory;
 	}

 	public void setWorkingDirectory(String dir) {
 		if(dir != null)
 			workingDirectory = dir;
 	}

 	public void setVerbose(boolean verbose) {
 		this.verbose = verbose;
 	}

 	public void setProcessAll(boolean all){
 		this.processAll = all;
 	}

 	public void addProcessStep(IProcessStep step) {
 		steps.add(step);
 	}

 	public void clearProcessSteps() {
 		steps.clear();
 	}

 	/**
 	 * Recreate a jar file.  The replacements map specifies entry names to be replaced, the replacements are
 	 * expected to be found in directory.
 	 *
 	 * @param jar - The input jar
 	 * @param outputJar - the output
 	 * @param replacements - map of entryName -> new entryName
 	 * @param directory - location to find file for new entryName
 	 * @throws IOException
 	 */
 	private void recreateJar(JarFile jar, JarOutputStream outputJar, Map replacements, File directory, Properties inf) throws IOException {
 		InputStream in = null;
 		boolean marked = false;
 		try {
 			Enumeration entries = jar.entries();
 			for (JarEntry entry = (JarEntry) entries.nextElement(); entry != null; entry = entries.hasMoreElements() ? (JarEntry) entries.nextElement() : null) {
 				File replacement = null;
 				JarEntry newEntry = null;
 				if (replacements.containsKey(entry.getName())) {
 					String name = (String) replacements.get(entry.getName());
 					replacement = new File(directory, name);
 					if (name != null) {
 						if (replacement.exists()) {
 							try {
 								in = new BufferedInputStream(new FileInputStream(replacement));
 								newEntry = new JarEntry(name);
 							} catch (Exception e) {
 								if (verbose) {
 									e.printStackTrace();
 									System.out.println("Warning: Problem reading " +replacement.getPath() + ", using " + jar.getName() + File.separator + entry.getName()  + " instead.");
 								}
 							}
 						} else if (verbose) {
 							System.out.println("Warning: " + replacement.getPath() + " not found, using " + jar.getName() + File.separator + entry.getName() + " instead.");
 						}
 					}
 				}
 				if (newEntry == null) {
 					try {
 						in = new BufferedInputStream(jar.getInputStream(entry));
 						newEntry = new JarEntry(entry.getName());
 					} catch( Exception e ) {
 						if(verbose) {
 							e.printStackTrace();
 							System.out.println("ERROR: problem reading " + entry.getName() + " from " + jar.getName());
 						}
 						continue;
 					}
 				}
 				newEntry.setTime(entry.getTime());
 				outputJar.putNextEntry(newEntry);
 				if (entry.getName().equals(Utils.MARK_FILE_NAME)) {
 					//The eclipse.inf file was read in earlier, don't need to reread it, just write it out now
 					Utils.storeProperties(inf, outputJar);
 					marked = true;
 				} else {
 					Utils.transferStreams(in, outputJar, false);
 				}
 				outputJar.closeEntry();
 				in.close();

 				//delete the nested jar file
 				if (replacement != null) {
 					replacement.delete();
 				}
 			}
 			if (!marked) {
 				JarEntry entry = new JarEntry(Utils.MARK_FILE_NAME);
 				outputJar.putNextEntry(entry);
 				Utils.storeProperties(inf, outputJar);
 				outputJar.closeEntry();
 			}
 		} finally {
 			Utils.close(outputJar);
 			Utils.close(jar);
 			Utils.close(in);
 		}
 	}

 	private String recursionEffect(String entryName) {
 		String result = null;
 		for (Iterator iter = steps.iterator(); iter.hasNext();) {
 			IProcessStep step = (IProcessStep) iter.next();

 			result = step.recursionEffect(entryName);
 			if (result != null)
 				entryName = result;
 		}
 		return result;
 	}

 	private void extractEntries(JarFile jar, File tempDir, Map data, Properties inf) throws IOException {
 		if(inf != null ) {
 			//skip if excluding children
 			if(inf.containsKey(Utils.MARK_EXCLUDE_CHILDREN)){
 				String excludeChildren = inf.getProperty(Utils.MARK_EXCLUDE_CHILDREN);
 				if( Boolean.valueOf(excludeChildren).booleanValue() )
 					if(verbose){
 						for(int i = 0; i <= depth; i++)
 							System.out.print("  "); //$NON-NLS-1$
 						System.out.println("Children of " + jar.getName() + "are excluded from processing.");
 					}
 					return;
 			}
 		}

 		Enumeration entries = jar.entries();
 		if (entries.hasMoreElements()) {
 			for (JarEntry entry = (JarEntry) entries.nextElement(); entry != null; entry = entries.hasMoreElements() ? (JarEntry) entries.nextElement() : null) {
 				String name = entry.getName();
 				String newName = recursionEffect(name);
 				if (newName != null) {
 					if(verbose){
 						for(int i = 0; i <= depth; i++)
 							System.out.print("  "); //$NON-NLS-1$
 						System.out.println("Processing nested file: " + name); //$NON-NLS-1$
 					}
 					//extract entry to temp directory
 					File extracted = new File(tempDir, name);
 					File parentDir = extracted.getParentFile();
 					if (!parentDir.exists())
 						parentDir.mkdirs();

 					InputStream in = null;
 					OutputStream out = null;
 					try {
 						in = jar.getInputStream(entry);
 						out = new BufferedOutputStream(new FileOutputStream(extracted));
 						Utils.transferStreams(in, out, true); //this will close both streams
 					} finally {
 						Utils.close(in);
 						Utils.close(out);
 					}
 					extracted.setLastModified(entry.getTime());

 					//recurse
 					containingInfs.addFirst(inf);
 					String dir = getWorkingDirectory();
 					setWorkingDirectory(parentDir.getCanonicalPath());
 					File result = processJar(extracted);

 					newName = name.substring(0, name.length() - extracted.getName().length()) + result.getName();
 					data.put(name, newName);

 					setWorkingDirectory(dir);
 					containingInfs.removeFirst();

 					//delete the extracted item leaving the recursion result
 					if (!name.equals(newName))
 						extracted.delete();
 				}
 			}
 		}
 	}

 	private File preProcess(File input, File tempDir) {
 		File result = null;
 		for (Iterator iter = steps.iterator(); iter.hasNext();) {
 			IProcessStep step = (IProcessStep) iter.next();
 			result = step.preProcess(input, tempDir, containingInfs);
 			if (result != null)
 				input = result;
 		}
 		return input;
 	}

 	private File postProcess(File input, File tempDir) {
 		File result = null;
 		for (Iterator iter = steps.iterator(); iter.hasNext();) {
 			IProcessStep step = (IProcessStep) iter.next();
 			result = step.postProcess(input, tempDir, containingInfs);
 			if (result != null)
 				input = result;
 		}
 		return input;
 	}

 	private void adjustInf(File input, Properties inf) {
 		for (Iterator iter = steps.iterator(); iter.hasNext();) {
 			IProcessStep step = (IProcessStep) iter.next();
 			step.adjustInf(input, inf, containingInfs);
 		}
 	}

 	public File processJar(File input) throws IOException {
 		++depth;
 		long lastModified = input.lastModified();
 		File workingDir = new File(getWorkingDirectory());
 		if (!workingDir.exists())
 			workingDir.mkdirs();

 		boolean skip = Utils.shouldSkipJar(input, processAll, verbose);
 		if (depth == 0 && verbose) {
 			if (skip)
 				System.out.println("Skipping " + input.getPath()); //$NON-NLS-1$
 			else {
 				System.out.print("Running "); //$NON-NLS-1$
 				for (Iterator iter = steps.iterator(); iter.hasNext();) {
 					IProcessStep step = (IProcessStep) iter.next();
 					System.out.print(step.getStepName() + " "); //$NON-NLS-1$
 				}
 				System.out.println("on " + input.getPath()); //$NON-NLS-1$
 			}
 		}

 		if (skip) {
 			//This jar was not marked as conditioned, and we are only processing conditioned jars, so do nothing
 			--depth;
 			return input;
 		}

 		//pre
 		File workingFile = preProcess(input, workingDir);

 		//Extract entries from jar and recurse on them
 		File tempDir = null;
 		if (depth == 0) {
 			tempDir = new File(workingDir, "temp." + workingFile.getName()); //$NON-NLS-1$
 		} else {
 			File parent = workingDir.getParentFile();
 			tempDir = new File(parent, "temp_" + depth + '_' + workingFile.getName()); //$NON-NLS-1$
 		}

 		JarFile jar = new JarFile(workingFile, false);
 		Map replacements = new HashMap();
 		Properties inf = Utils.getEclipseInf(workingFile, verbose);
 		extractEntries(jar, tempDir, replacements, inf);

 		if (inf != null)
 			adjustInf(workingFile, inf);

 		//Recreate the jar with replacements.
 		//TODO: This is not strictly necessary if we didn't change the inf file and didn't change any content
 		File tempJar = null;
 		tempJar = new File(tempDir, workingFile.getName());
 		File parent = tempJar.getParentFile();
 		if (!parent.exists())
 			parent.mkdirs();
 		JarOutputStream jarOut = new JarOutputStream(new BufferedOutputStream(new FileOutputStream(tempJar)));
 		recreateJar(jar, jarOut, replacements, tempDir, inf);

 		jar.close();
 		if (tempJar != null) {
 			if (!workingFile.equals(input)) {
 				workingFile.delete();
 			}
 			workingFile = tempJar;
 		}

 		//post
 		File result = postProcess(workingFile, workingDir);

 		//have to normalize after the post steps
 		normalize(result, workingDir);

 		if (!result.equals(workingFile) && !workingFile.equals(input))
 			workingFile.delete();
 		if (!result.getParentFile().equals(workingDir)) {
 			File finalFile = new File(workingDir, result.getName());
 			if (finalFile.exists())
 				finalFile.delete();
 			result.renameTo(finalFile);
 			result = finalFile;
 		}

 		if (tempDir.exists())
 			Utils.clear(tempDir);

 		result.setLastModified(lastModified);
 		--depth;
 		return result;
 	}

 	private void normalize(File input, File workingDirectory) {
 		if(input.getName().endsWith(Utils.PACKED_SUFFIX)) {
 			//not a jar
 			return;
 		}
 		try {
 			File tempJar = new File(workingDirectory, "temp_" + input.getName()); //$NON-NLS-1$
 			JarFile jar = null;
 			try {
 				jar = new JarFile(input, false);
 			} catch (JarException e) {
 				//not a jar
 				return ;
 			}
 			JarOutputStream jarOut = new JarOutputStream(new BufferedOutputStream(new FileOutputStream(tempJar)));
 			InputStream in = null;
 			try {
 				Enumeration entries = jar.entries();
 				for (JarEntry entry = (JarEntry) entries.nextElement(); entry != null; entry = entries.hasMoreElements() ? (JarEntry) entries.nextElement() : null) {
 					JarEntry newEntry = new JarEntry(entry.getName());
 					newEntry.setTime(entry.getTime());
 					in = new BufferedInputStream(jar.getInputStream(entry));
 					jarOut.putNextEntry(newEntry);
 					Utils.transferStreams(in, jarOut, false);
 					jarOut.closeEntry();
 					in.close();
 				}
 			} finally {
 				Utils.close(jarOut);
 				Utils.close(jar);
 				Utils.close(in);
 			}
 			tempJar.setLastModified(input.lastModified());
 			input.delete();
 			tempJar.renameTo(input);
 		} catch (IOException e) {
 			if (verbose) {
 				System.out.println("Error normalizing jar " + input.getName()); //$NON-NLS-1$
 				e.printStackTrace();
 			}
 		}
 	}
 }
	/*******************************************************************************
	* Copyright (c) 2006, 2007 IBM Corporation and others.
	* All rights reserved. This program and the accompanying materials
	* are made available under the terms of the Eclipse Public License v1.0
	* which accompanies this distribution, and is available at
	* http://www.eclipse.org/legal/epl-v10.html
	*
	* Contributors:
	* IBM - Initial API and implementation
	*******************************************************************************/
	package org.eclipse.update.internal.jarprocessor;

	import java.io.*;
	import java.util.*;
	import java.util.jar.*;

	/**
	* @author aniefer@ca.ibm.com
	*
	*/
	public class JarProcessor {
	private List steps = new ArrayList();
	private String workingDirectory = ""; //$NON-NLS-1$
	private int depth = -1;
	private boolean verbose = false;
	private boolean processAll = false;
	private LinkedList containingInfs = new LinkedList();

	static public JarProcessor getUnpackProcessor(Properties properties) {
	if (!canPerformUnpack())
	throw new UnsupportedOperationException();
	JarProcessor processor = new JarProcessor();
	processor.addProcessStep(new UnpackStep(properties));
	return processor;
	}

	static public JarProcessor getPackProcessor(Properties properties) {
	if (!canPerformPack())
	throw new UnsupportedOperationException();
	JarProcessor processor = new JarProcessor();
	processor.addProcessStep(new PackStep(properties));
	return processor;
	}

	static public boolean canPerformPack() {
	return PackStep.canPack();
	}

	static public boolean canPerformUnpack() {
	return UnpackStep.canUnpack();
	}

	public String getWorkingDirectory() {
	return workingDirectory;
	}

	public void setWorkingDirectory(String dir) {
	if(dir != null)
	workingDirectory = dir;
	}

	public void setVerbose(boolean verbose) {
	this.verbose = verbose;
	}

	public void setProcessAll(boolean all){
	this.processAll = all;
	}

	public void addProcessStep(IProcessStep step) {
	steps.add(step);
	}

	public void clearProcessSteps() {
	steps.clear();
	}

	/**
	* Recreate a jar file. The replacements map specifies entry names to be replaced, the replacements are
	* expected to be found in directory.
	*
	* @param jar - The input jar
	* @param outputJar - the output
	* @param replacements - map of entryName -> new entryName
	* @param directory - location to find file for new entryName
	* @throws IOException
	*/
	private void recreateJar(JarFile jar, JarOutputStream outputJar, Map replacements, File directory, Properties inf) throws IOException {
	InputStream in = null;
	boolean marked = false;
	try {
	Enumeration entries = jar.entries();
	for (JarEntry entry = (JarEntry) entries.nextElement(); entry != null; entry = entries.hasMoreElements() ? (JarEntry) entries.nextElement() : null) {
	File replacement = null;
	JarEntry newEntry = null;
	if (replacements.containsKey(entry.getName())) {
	String name = (String) replacements.get(entry.getName());
	replacement = new File(directory, name);
	if (name != null) {
	if (replacement.exists()) {
	try {
	in = new BufferedInputStream(new FileInputStream(replacement));
	newEntry = new JarEntry(name);
	} catch (Exception e) {
	if (verbose) {
	e.printStackTrace();
	System.out.println("Warning: Problem reading " +replacement.getPath() + ", using " + jar.getName() + File.separator + entry.getName() + " instead.");
	}
	}
	} else if (verbose) {
	System.out.println("Warning: " + replacement.getPath() + " not found, using " + jar.getName() + File.separator + entry.getName() + " instead.");
	}
	}
	}
	if (newEntry == null) {
	try {
	in = new BufferedInputStream(jar.getInputStream(entry));
	newEntry = new JarEntry(entry.getName());
	} catch( Exception e ) {
	if(verbose) {
	e.printStackTrace();
	System.out.println("ERROR: problem reading " + entry.getName() + " from " + jar.getName());
	}
	continue;
	}
	}
	newEntry.setTime(entry.getTime());
	outputJar.putNextEntry(newEntry);
	if (entry.getName().equals(Utils.MARK_FILE_NAME)) {
	//The eclipse.inf file was read in earlier, don't need to reread it, just write it out now
	Utils.storeProperties(inf, outputJar);
	marked = true;
	} else {
	Utils.transferStreams(in, outputJar, false);
	}
	outputJar.closeEntry();
	in.close();

	//delete the nested jar file
	if (replacement != null) {
	replacement.delete();
	}
	}
	if (!marked) {
	JarEntry entry = new JarEntry(Utils.MARK_FILE_NAME);
	outputJar.putNextEntry(entry);
	Utils.storeProperties(inf, outputJar);
	outputJar.closeEntry();
	}
	} finally {
	Utils.close(outputJar);
	Utils.close(jar);
	Utils.close(in);
	}
	}

	private String recursionEffect(String entryName) {
	String result = null;
	for (Iterator iter = steps.iterator(); iter.hasNext();) {
	IProcessStep step = (IProcessStep) iter.next();

	result = step.recursionEffect(entryName);
	if (result != null)
	entryName = result;
	}
	return result;
	}

	private void extractEntries(JarFile jar, File tempDir, Map data, Properties inf) throws IOException {
	if(inf != null ) {
	//skip if excluding children
	if(inf.containsKey(Utils.MARK_EXCLUDE_CHILDREN)){
	String excludeChildren = inf.getProperty(Utils.MARK_EXCLUDE_CHILDREN);
	if( Boolean.valueOf(excludeChildren).booleanValue() )
	if(verbose){
	for(int i = 0; i <= depth; i++)
	System.out.print(" "); //$NON-NLS-1$
	System.out.println("Children of " + jar.getName() + "are excluded from processing.");
	}
	return;
	}
	}

	Enumeration entries = jar.entries();
	if (entries.hasMoreElements()) {
	for (JarEntry entry = (JarEntry) entries.nextElement(); entry != null; entry = entries.hasMoreElements() ? (JarEntry) entries.nextElement() : null) {
	String name = entry.getName();
	String newName = recursionEffect(name);
	if (newName != null) {
	if(verbose){
	for(int i = 0; i <= depth; i++)
	System.out.print(" "); //$NON-NLS-1$
	System.out.println("Processing nested file: " + name); //$NON-NLS-1$
	}
	//extract entry to temp directory
	File extracted = new File(tempDir, name);
	File parentDir = extracted.getParentFile();
	if (!parentDir.exists())
	parentDir.mkdirs();

	InputStream in = null;
	OutputStream out = null;
	try {
	in = jar.getInputStream(entry);
	out = new BufferedOutputStream(new FileOutputStream(extracted));
	Utils.transferStreams(in, out, true); //this will close both streams
	} finally {
	Utils.close(in);
	Utils.close(out);
	}
	extracted.setLastModified(entry.getTime());

	//recurse
	containingInfs.addFirst(inf);
	String dir = getWorkingDirectory();
	setWorkingDirectory(parentDir.getCanonicalPath());
	File result = processJar(extracted);

	newName = name.substring(0, name.length() - extracted.getName().length()) + result.getName();
	data.put(name, newName);

	setWorkingDirectory(dir);
	containingInfs.removeFirst();

	//delete the extracted item leaving the recursion result
	if (!name.equals(newName))
	extracted.delete();
	}
	}
	}
	}

	private File preProcess(File input, File tempDir) {
	File result = null;
	for (Iterator iter = steps.iterator(); iter.hasNext();) {
	IProcessStep step = (IProcessStep) iter.next();
	result = step.preProcess(input, tempDir, containingInfs);
	if (result != null)
	input = result;
	}
	return input;
	}

	private File postProcess(File input, File tempDir) {
	File result = null;
	for (Iterator iter = steps.iterator(); iter.hasNext();) {
	IProcessStep step = (IProcessStep) iter.next();
	result = step.postProcess(input, tempDir, containingInfs);
	if (result != null)
	input = result;
	}
	return input;
	}

	private void adjustInf(File input, Properties inf) {
	for (Iterator iter = steps.iterator(); iter.hasNext();) {
	IProcessStep step = (IProcessStep) iter.next();
	step.adjustInf(input, inf, containingInfs);
	}
	}

	public File processJar(File input) throws IOException {
	++depth;
	long lastModified = input.lastModified();
	File workingDir = new File(getWorkingDirectory());
	if (!workingDir.exists())
	workingDir.mkdirs();

	boolean skip = Utils.shouldSkipJar(input, processAll, verbose);
	if (depth == 0 && verbose) {
	if (skip)
	System.out.println("Skipping " + input.getPath()); //$NON-NLS-1$
	else {
	System.out.print("Running "); //$NON-NLS-1$
	for (Iterator iter = steps.iterator(); iter.hasNext();) {
	IProcessStep step = (IProcessStep) iter.next();
	System.out.print(step.getStepName() + " "); //$NON-NLS-1$
	}
	System.out.println("on " + input.getPath()); //$NON-NLS-1$
	}
	}

	if (skip) {
	//This jar was not marked as conditioned, and we are only processing conditioned jars, so do nothing
	--depth;
	return input;
	}

	//pre
	File workingFile = preProcess(input, workingDir);

	//Extract entries from jar and recurse on them
	File tempDir = null;
	if (depth == 0) {
	tempDir = new File(workingDir, "temp." + workingFile.getName()); //$NON-NLS-1$
	} else {
	File parent = workingDir.getParentFile();
	tempDir = new File(parent, "temp_" + depth + '_' + workingFile.getName()); //$NON-NLS-1$
	}

	JarFile jar = new JarFile(workingFile, false);
	Map replacements = new HashMap();
	Properties inf = Utils.getEclipseInf(workingFile, verbose);
	extractEntries(jar, tempDir, replacements, inf);

	if (inf != null)
	adjustInf(workingFile, inf);

	//Recreate the jar with replacements.
	//TODO: This is not strictly necessary if we didn't change the inf file and didn't change any content
	File tempJar = null;
	tempJar = new File(tempDir, workingFile.getName());
	File parent = tempJar.getParentFile();
	if (!parent.exists())
	parent.mkdirs();
	JarOutputStream jarOut = new JarOutputStream(new BufferedOutputStream(new FileOutputStream(tempJar)));
	recreateJar(jar, jarOut, replacements, tempDir, inf);

	jar.close();
	if (tempJar != null) {
	if (!workingFile.equals(input)) {
	workingFile.delete();
	}
	workingFile = tempJar;
	}

	//post
	File result = postProcess(workingFile, workingDir);

	//have to normalize after the post steps
	normalize(result, workingDir);

	if (!result.equals(workingFile) && !workingFile.equals(input))
	workingFile.delete();
	if (!result.getParentFile().equals(workingDir)) {
	File finalFile = new File(workingDir, result.getName());
	if (finalFile.exists())
	finalFile.delete();
	result.renameTo(finalFile);
	result = finalFile;
	}

	if (tempDir.exists())
	Utils.clear(tempDir);

	result.setLastModified(lastModified);
	--depth;
	return result;
	}

	private void normalize(File input, File workingDirectory) {
	if(input.getName().endsWith(Utils.PACKED_SUFFIX)) {
	//not a jar
	return;
	}
	try {
	File tempJar = new File(workingDirectory, "temp_" + input.getName()); //$NON-NLS-1$
	JarFile jar = null;
	try {
	jar = new JarFile(input, false);
	} catch (JarException e) {
	//not a jar
	return ;
	}
	JarOutputStream jarOut = new JarOutputStream(new BufferedOutputStream(new FileOutputStream(tempJar)));
	InputStream in = null;
	try {
	Enumeration entries = jar.entries();
	for (JarEntry entry = (JarEntry) entries.nextElement(); entry != null; entry = entries.hasMoreElements() ? (JarEntry) entries.nextElement() : null) {
	JarEntry newEntry = new JarEntry(entry.getName());
	newEntry.setTime(entry.getTime());
	in = new BufferedInputStream(jar.getInputStream(entry));
	jarOut.putNextEntry(newEntry);
	Utils.transferStreams(in, jarOut, false);
	jarOut.closeEntry();
	in.close();
	}
	} finally {
	Utils.close(jarOut);
	Utils.close(jar);
	Utils.close(in);
	}
	tempJar.setLastModified(input.lastModified());
	input.delete();
	tempJar.renameTo(input);
	} catch (IOException e) {
	if (verbose) {
	System.out.println("Error normalizing jar " + input.getName()); //$NON-NLS-1$
	e.printStackTrace();
	}
	}
	}
	}