models/epidemiology/org.eclipse.stem.diseasemodels/model/standard.ecore

<?xml version="1.0" encoding="UTF-8"?>
<ecore:EPackage xmi:version="2.0"
    xmlns:xmi="http://www.omg.org/XMI" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
    xmlns:ecore="http://www.eclipse.org/emf/2002/Ecore" name="standard"
    nsURI="http:///org/eclipse/stem/diseasemodels/standard.ecore" nsPrefix="org.eclipse.stem.diseasemodels.standard">
  <eClassifiers xsi:type="ecore:EClass" name="DeterministicSEIRDiseaseModel" eSuperTypes="#//SEIR"/>
  <eClassifiers xsi:type="ecore:EClass" name="DeterministicSIDiseaseModel" eSuperTypes="#//SI"/>
  <eClassifiers xsi:type="ecore:EClass" name="DeterministicSIRDiseaseModel" eSuperTypes="#//SIR"/>
  <eClassifiers xsi:type="ecore:EClass" name="DiseaseModel" abstract="true" eSuperTypes="../../org.eclipse.stem.core/model/model.ecore#//IntegrationDecorator ../../org.eclipse.stem.core/model/modifier.ecore#//Modifiable">
    <eOperations name="createDiseaseModelLabel" eType="#//DiseaseModelLabel">
      <eParameters name="populationIdentifier" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EString"/>
    </eOperations>
    <eOperations name="createDiseaseModelLabelValue" eType="#//DiseaseModelLabelValue">
      <eParameters name="populationIdentifier" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EString"/>
    </eOperations>
    <eOperations name="createInfector" eType="#//Infector"/>
    <eOperations name="getAllLabelIdentifiers" upperBound="-1" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EString"/>
    <eOperations name="getPopulationModelLabels" upperBound="-1" eType="ecore:EClass ../../org.eclipse.stem.populationmodels/model/standard.ecore#//PopulationModelLabel">
      <eParameters name="populationIdentifier" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EString"/>
      <eParameters name="graph" eType="ecore:EClass ../../org.eclipse.stem.core/model/graph.ecore#//Graph"/>
    </eOperations>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="populationIdentifier" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EString"
        defaultValueLiteral="human"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="timePeriod" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//ELong"
        defaultValueLiteral="86400000"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="diseaseName" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EString"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="finiteDifference" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EBoolean"
        defaultValueLiteral="true"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="frequencyDependent" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EBoolean"
        defaultValueLiteral="true"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="DiseaseModelLabel" abstract="true" eSuperTypes="../../org.eclipse.stem.core/model/graph.ecore#//IntegrationLabel">
    <eOperations name="toTooltipString" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EString"/>
    <eStructuralFeatures xsi:type="ecore:EReference" name="populationLabel" eType="ecore:EClass ../../org.eclipse.stem.definitions/model/labels.ecore#//PopulationLabel"/>
    <eStructuralFeatures xsi:type="ecore:EReference" name="populationModelLabel" eType="ecore:EClass ../../org.eclipse.stem.populationmodels/model/standard.ecore#//PopulationModelLabel"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="DiseaseModelLabelValue" abstract="true"
      eSuperTypes="../../org.eclipse.stem.core/model/graph.ecore#//IntegrationLabelValue">
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="populationCount" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"
        changeable="false" volatile="true" transient="true"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="Infector" abstract="true" eSuperTypes="../../org.eclipse.stem.core/model/model.ecore#//NodeDecorator ../../org.eclipse.stem.core/model/modifier.ecore#//Modifiable">
    <eStructuralFeatures xsi:type="ecore:EReference" name="diseaseModel" eType="#//StandardDiseaseModel"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="targetURI" eType="ecore:EDataType ../../org.eclipse.stem.core/model/common.ecore#//URI"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="diseaseName" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EString"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="targetISOKey" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EString"/>
    <eStructuralFeatures xsi:type="ecore:EReference" name="labelsToInfect" upperBound="-1"
        eType="#//DiseaseModelLabel"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="populationIdentifier" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EString"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="infectPercentage" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EBoolean"
        defaultValueLiteral="false"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="targetFeature" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EString"
        defaultValueLiteral="i"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="SEIR" abstract="true" eSuperTypes="#//SIR">
    <eOperations name="getAdjustedIncubationRate" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble">
      <eParameters name="timeDelta" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//ELong"/>
    </eOperations>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="incubationRate" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"
        defaultValueLiteral="0.0"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="SEIRLabel" eSuperTypes="#//StandardDiseaseModelLabel"/>
  <eClassifiers xsi:type="ecore:EClass" name="SEIRLabelValue" eSuperTypes="#//SIRLabelValue">
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="e" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="SI" abstract="true" eSuperTypes="#//StandardDiseaseModel">
    <eOperations name="getAdjustedInfectiousMortalityRate" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble">
      <eParameters name="timeDelta" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//ELong"/>
    </eOperations>
    <eOperations name="getAdjustedTransmissionRate" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble">
      <eParameters name="timeDelta" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//ELong"/>
    </eOperations>
    <eOperations name="getAdjustedRecoveryRate" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble">
      <eParameters name="timeDelta" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//ELong"/>
    </eOperations>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="transmissionRate" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"
        defaultValueLiteral="0.0"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="nonLinearityCoefficient"
        eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble" defaultValueLiteral="1.0"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="recoveryRate" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"
        defaultValueLiteral="0.0"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="infectiousMortalityRate"
        eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble" defaultValueLiteral="0.0"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="SIInfector" eSuperTypes="#//StandardInfector">
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="infectiousCount" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"
        defaultValueLiteral="1"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="SILabel" eSuperTypes="#//StandardDiseaseModelLabel"/>
  <eClassifiers xsi:type="ecore:EClass" name="SILabelValue" eSuperTypes="#//StandardDiseaseModelLabelValue">
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="i" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="SIR" abstract="true" eSuperTypes="#//SI">
    <eOperations name="getAdjustedImmunityLossRate" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble">
      <eParameters name="timeDelta" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//ELong"/>
    </eOperations>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="immunityLossRate" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"
        defaultValueLiteral="0.0"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="SIRLabel" eSuperTypes="#//StandardDiseaseModelLabel"/>
  <eClassifiers xsi:type="ecore:EClass" name="SIRLabelValue" eSuperTypes="#//SILabelValue">
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="r" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="StandardDiseaseModel" abstract="true"
      eSuperTypes="#//DiseaseModel">
    <eOperations name="getNormalizedEffectiveInfectious" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble">
      <eParameters name="node" eType="ecore:EClass ../../org.eclipse.stem.core/model/graph.ecore#//Node"/>
      <eParameters name="diseaseLabel" eType="#//StandardDiseaseModelLabel"/>
      <eParameters name="onsiteInfectious" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"/>
      <eParameters name="infectiousAttribute" eType="ecore:EClass platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EAttribute"/>
    </eOperations>
    <eOperations name="getNormalizedEffectiveInfectious" upperBound="-1" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble">
      <eParameters name="diseaseLabel" eType="#//StandardDiseaseModelLabel"/>
      <eParameters name="infectiousAttributes" upperBound="-1" eType="ecore:EClass platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EAttribute"/>
    </eOperations>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="referencePopulationDensity"
        eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble" defaultValueLiteral="100"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="roadNetworkInfectiousProportion"
        eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EDouble"
        defaultValueLiteral="0.01"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="characteristicMixingDistance"
        eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EDouble"
        defaultValueLiteral="2.25"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="StandardDiseaseModelLabel" abstract="true"
      eSuperTypes="#//DiseaseModelLabel"/>
  <eClassifiers xsi:type="ecore:EClass" name="StandardDiseaseModelLabelValue" abstract="true"
      eSuperTypes="#//DiseaseModelLabelValue">
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="s" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="incidence" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EDouble"
        defaultValueLiteral="0.0"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="diseaseDeaths" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EDouble"
        defaultValueLiteral="0.0"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="StandardInfector" abstract="true" eSuperTypes="#//Infector"/>
  <eClassifiers xsi:type="ecore:EClass" name="StochasticSEIRDiseaseModel" eSuperTypes="#//SEIR #//StandardStochasticDiseaseModel"/>
  <eClassifiers xsi:type="ecore:EClass" name="StochasticSIDiseaseModel" eSuperTypes="#//SI #//StandardStochasticDiseaseModel"/>
  <eClassifiers xsi:type="ecore:EClass" name="StochasticSIRDiseaseModel" eSuperTypes="#//SIR #//StandardStochasticDiseaseModel"/>
  <eClassifiers xsi:type="ecore:EClass" name="StochasticDiseaseModel" abstract="true">
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="seed" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//ELong"
        defaultValueLiteral="0"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="randomGenerator" eType="#//Random"
        changeable="false" defaultValueLiteral="0"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="StandardStochasticDiseaseModel" abstract="true"
      eSuperTypes="#//StochasticDiseaseModel">
    <eOperations name="computeNoise" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="gain" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"
        defaultValueLiteral="0.01"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EClass" name="SIRInoculator" eSuperTypes="#//SIInfector">
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="inoculatedPercentage" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EDouble"
        defaultValueLiteral="1"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="inoculatePercentage" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EBoolean"
        defaultValueLiteral="true"/>
  </eClassifiers>
  <eClassifiers xsi:type="ecore:EDataType" name="Random" instanceClassName="java.util.Random"/>
  <eClassifiers xsi:type="ecore:EClass" name="StochasticPoissonSIDiseaseModel" eSuperTypes="#//SI"/>
  <eClassifiers xsi:type="ecore:EClass" name="StochasticPoissonSIRDiseaseModel" eSuperTypes="#//SIR"/>
  <eClassifiers xsi:type="ecore:EClass" name="StochasticPoissonSEIRDiseaseModel" eSuperTypes="#//SEIR"/>
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    <eStructuralFeatures xsi:type="ecore:EReference" name="list" upperBound="-1" eType="#//Infector"
        containment="true"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="importFolder" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EString"
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  <eClassifiers xsi:type="ecore:EClass" name="Initializer" eSuperTypes="../../org.eclipse.stem.core/model/model.ecore#//NodeDecorator">
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="diseaseName" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EString"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="targetISOKey" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EString"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="targetURI" eType="ecore:EDataType ../../org.eclipse.stem.core/model/common.ecore#//URI"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="populationIdentifier" eType="ecore:EDataType http://www.eclipse.org/emf/2002/Ecore#//EString"/>
    <eStructuralFeatures xsi:type="ecore:EAttribute" name="compartments" upperBound="-1"
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    <eStructuralFeatures xsi:type="ecore:EAttribute" name="useFractions" eType="ecore:EDataType platform:/plugin/org.eclipse.emf.ecore/model/Ecore.ecore#//EBoolean"/>
  </eClassifiers>
</ecore:EPackage>