| package org.eclipse.stem.diseasemodels.predicates.diseasepredicates.impl; |
| |
| /******************************************************************************* |
| * Copyright (c) 2011 IBM Corporation and others. |
| * All rights reserved. This program and the accompanying materials |
| * are made available under the terms of the Eclipse Public License v1.0 |
| * which accompanies this distribution, and is available at |
| * http://www.eclipse.org/legal/epl-v10.html |
| * |
| * Contributors: |
| * IBM Corporation - initial API and implementation |
| *******************************************************************************/ |
| |
| import java.util.HashSet; |
| import java.util.Set; |
| |
| import org.eclipse.emf.common.notify.Notification; |
| |
| import org.eclipse.emf.common.util.URI; |
| |
| import org.eclipse.emf.ecore.EAttribute; |
| import org.eclipse.emf.ecore.EClass; |
| import org.eclipse.emf.ecore.EDataType; |
| |
| import org.eclipse.emf.ecore.impl.ENotificationImpl; |
| |
| import org.eclipse.stem.core.graph.DynamicLabel; |
| import org.eclipse.stem.core.graph.Graph; |
| import org.eclipse.stem.core.graph.LabelValue; |
| import org.eclipse.stem.core.graph.Node; |
| import org.eclipse.stem.core.graph.NodeLabel; |
| import org.eclipse.stem.core.model.Decorator; |
| import org.eclipse.stem.core.model.STEMTime; |
| import org.eclipse.stem.core.predicate.impl.TestImpl; |
| |
| import org.eclipse.stem.definitions.LocationUtility; |
| import org.eclipse.stem.diseasemodels.predicates.diseasepredicates.DiseasepredicatesPackage; |
| import org.eclipse.stem.diseasemodels.predicates.diseasepredicates.LabelValueTest; |
| import org.eclipse.stem.diseasemodels.standard.DiseaseModel; |
| import org.eclipse.stem.diseasemodels.standard.DiseaseModelLabel; |
| import org.eclipse.stem.populationmodels.standard.PopulationModel; |
| import org.eclipse.stem.populationmodels.standard.PopulationModelLabel; |
| |
| /** |
| * <!-- begin-user-doc --> |
| * An implementation of the model object '<em><b>Label Value Test</b></em>'. |
| * <!-- end-user-doc --> |
| * <p> |
| * The following features are implemented: |
| * <ul> |
| * <li>{@link org.eclipse.stem.diseasemodels.predicates.diseasepredicates.impl.LabelValueTestImpl#getModelName <em>Model Name</em>}</li> |
| * <li>{@link org.eclipse.stem.diseasemodels.predicates.diseasepredicates.impl.LabelValueTestImpl#getTargetURI <em>Target URI</em>}</li> |
| * <li>{@link org.eclipse.stem.diseasemodels.predicates.diseasepredicates.impl.LabelValueTestImpl#getState <em>State</em>}</li> |
| * <li>{@link org.eclipse.stem.diseasemodels.predicates.diseasepredicates.impl.LabelValueTestImpl#getThreshold <em>Threshold</em>}</li> |
| * <li>{@link org.eclipse.stem.diseasemodels.predicates.diseasepredicates.impl.LabelValueTestImpl#getPredicate <em>Predicate</em>}</li> |
| * <li>{@link org.eclipse.stem.diseasemodels.predicates.diseasepredicates.impl.LabelValueTestImpl#getPopulationIdentifier <em>Population Identifier</em>}</li> |
| * </ul> |
| * </p> |
| * |
| * @generated |
| */ |
| public class LabelValueTestImpl extends TestImpl implements LabelValueTest { |
| /** |
| * The default value of the '{@link #getModelName() <em>Model Name</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getModelName() |
| * @generated |
| * @ordered |
| */ |
| protected static final String MODEL_NAME_EDEFAULT = null; |
| |
| /** |
| * The cached value of the '{@link #getModelName() <em>Model Name</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getModelName() |
| * @generated |
| * @ordered |
| */ |
| protected String modelName = MODEL_NAME_EDEFAULT; |
| |
| /** |
| * The default value of the '{@link #getTargetURI() <em>Target URI</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getTargetURI() |
| * @generated |
| * @ordered |
| */ |
| protected static final URI TARGET_URI_EDEFAULT = null; |
| |
| /** |
| * The cached value of the '{@link #getTargetURI() <em>Target URI</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getTargetURI() |
| * @generated |
| * @ordered |
| */ |
| protected URI targetURI = TARGET_URI_EDEFAULT; |
| |
| /** |
| * The default value of the '{@link #getState() <em>State</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getState() |
| * @generated |
| * @ordered |
| */ |
| protected static final String STATE_EDEFAULT = "incidence"; //$NON-NLS-1$ |
| |
| /** |
| * The cached value of the '{@link #getState() <em>State</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getState() |
| * @generated |
| * @ordered |
| */ |
| protected String state = STATE_EDEFAULT; |
| |
| /** |
| * The default value of the '{@link #getThreshold() <em>Threshold</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getThreshold() |
| * @generated |
| * @ordered |
| */ |
| protected static final double THRESHOLD_EDEFAULT = 100.0; |
| |
| /** |
| * The cached value of the '{@link #getThreshold() <em>Threshold</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getThreshold() |
| * @generated |
| * @ordered |
| */ |
| protected double threshold = THRESHOLD_EDEFAULT; |
| |
| /** |
| * The default value of the '{@link #getPredicate() <em>Predicate</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getPredicate() |
| * @generated |
| * @ordered |
| */ |
| protected static final String PREDICATE_EDEFAULT = ">"; //$NON-NLS-1$ |
| |
| /** |
| * The cached value of the '{@link #getPredicate() <em>Predicate</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getPredicate() |
| * @generated |
| * @ordered |
| */ |
| protected String predicate = PREDICATE_EDEFAULT; |
| |
| /** |
| * The default value of the '{@link #getPopulationIdentifier() <em>Population Identifier</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getPopulationIdentifier() |
| * @generated |
| * @ordered |
| */ |
| protected static final String POPULATION_IDENTIFIER_EDEFAULT = "human"; //$NON-NLS-1$ |
| |
| /** |
| * The cached value of the '{@link #getPopulationIdentifier() <em>Population Identifier</em>}' attribute. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @see #getPopulationIdentifier() |
| * @generated |
| * @ordered |
| */ |
| protected String populationIdentifier = POPULATION_IDENTIFIER_EDEFAULT; |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| protected LabelValueTestImpl() { |
| super(); |
| } |
| |
| Set<LabelValue> labelValueCache; |
| EAttribute attribute; |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated NOT |
| */ |
| @Override |
| public boolean evaluate(STEMTime time, long timerPeriod, Graph graph) { |
| // First find the region (or set of regions contained) by the targetISOKey |
| |
| if(labelValueCache == null) |
| labelValueCache = this.findLabelValues(graph); |
| |
| if(labelValueCache == null) return false; // Unable to find the disease or other problem |
| double totalCount = 0.0; |
| |
| for(LabelValue currentValue:labelValueCache) { |
| double val = (Double)currentValue.eGet(attribute); |
| totalCount += val; |
| } |
| |
| // Check threshold |
| |
| if(this.getPredicate().equals("=") && totalCount == this.getThreshold()) |
| return true; |
| else if(this.getPredicate().equals(">") && totalCount > this.getThreshold()) |
| return true; |
| else if(this.getPredicate().equals("<") && totalCount < this.getThreshold()) |
| return true; |
| else if(this.getPredicate().equals(">=") && totalCount >= this.getThreshold()) |
| return true; |
| else if(this.getPredicate().equals("<=") && totalCount <= this.getThreshold()) |
| return true; |
| |
| return false; |
| } |
| |
| Set<LabelValue> findLabelValues(Graph graph) { |
| |
| HashSet<LabelValue> returnValue = new HashSet<LabelValue>(); |
| |
| final Node parent = graph.getNode(getTargetURI()); |
| if(parent == null) return null; |
| Set<Node> children = LocationUtility.getAllChildren(parent); |
| children.add(parent); |
| |
| // Find the matching disease/population model |
| |
| Decorator dec = null; |
| |
| for(Decorator d:graph.getDecorators()) { |
| if(d instanceof org.eclipse.stem.diseasemodels.standard.DiseaseModel && |
| ((DiseaseModel)d).getDiseaseName().equals(this.getModelName()) || |
| d instanceof PopulationModel && ((PopulationModel)d).getName().equals(this.getModelName())) { dec = d;break;} |
| } |
| |
| if(dec == null) // Not found |
| return null; |
| |
| // Now find the matching disease label and add up the states |
| |
| for(Node region:children) { |
| for(NodeLabel label : region.getLabels()) { |
| if(!(label instanceof DynamicLabel)) continue; |
| DynamicLabel dl = (DynamicLabel)label; |
| if(dl.getDecorator().equals(dec) && |
| (dl instanceof DiseaseModelLabel && ((DiseaseModelLabel)dl).getPopulationModelLabel().getPopulationIdentifier().equals(this.getPopulationIdentifier())) || |
| (dl instanceof PopulationModelLabel && ((PopulationModelLabel)dl).getPopulationIdentifier().equals(this.getPopulationIdentifier()))) { |
| |
| LabelValue currentValue = dl.getCurrentValue(); |
| // Find the matching state |
| for(EAttribute ea:currentValue.eClass().getEAllAttributes()) { |
| EDataType esf =ea.getEAttributeType(); |
| if(!esf.getName().equals("EDouble")) continue; |
| if(ea.getName().equals(this.getState())) { |
| if(attribute == null) attribute = ea; |
| returnValue.add(currentValue); |
| break; |
| } |
| } |
| } |
| } |
| } |
| |
| return returnValue; |
| } |
| |
| |
| /** |
| * Reset the cache |
| */ |
| |
| @Override |
| public void reset() { |
| this.attribute = null; |
| this.labelValueCache = null; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| @Override |
| protected EClass eStaticClass() { |
| return DiseasepredicatesPackage.Literals.LABEL_VALUE_TEST; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public String getModelName() { |
| return modelName; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public void setModelName(String newModelName) { |
| String oldModelName = modelName; |
| modelName = newModelName; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl(this, Notification.SET, DiseasepredicatesPackage.LABEL_VALUE_TEST__MODEL_NAME, oldModelName, modelName)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public URI getTargetURI() { |
| return targetURI; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public void setTargetURI(URI newTargetURI) { |
| URI oldTargetURI = targetURI; |
| targetURI = newTargetURI; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl(this, Notification.SET, DiseasepredicatesPackage.LABEL_VALUE_TEST__TARGET_URI, oldTargetURI, targetURI)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public String getState() { |
| return state; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public void setState(String newState) { |
| String oldState = state; |
| state = newState; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl(this, Notification.SET, DiseasepredicatesPackage.LABEL_VALUE_TEST__STATE, oldState, state)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public double getThreshold() { |
| return threshold; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public void setThreshold(double newThreshold) { |
| double oldThreshold = threshold; |
| threshold = newThreshold; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl(this, Notification.SET, DiseasepredicatesPackage.LABEL_VALUE_TEST__THRESHOLD, oldThreshold, threshold)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public String getPredicate() { |
| return predicate; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public void setPredicate(String newPredicate) { |
| String oldPredicate = predicate; |
| predicate = newPredicate; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl(this, Notification.SET, DiseasepredicatesPackage.LABEL_VALUE_TEST__PREDICATE, oldPredicate, predicate)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public String getPopulationIdentifier() { |
| return populationIdentifier; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public void setPopulationIdentifier(String newPopulationIdentifier) { |
| String oldPopulationIdentifier = populationIdentifier; |
| populationIdentifier = newPopulationIdentifier; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl(this, Notification.SET, DiseasepredicatesPackage.LABEL_VALUE_TEST__POPULATION_IDENTIFIER, oldPopulationIdentifier, populationIdentifier)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| @Override |
| public Object eGet(int featureID, boolean resolve, boolean coreType) { |
| switch (featureID) { |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__MODEL_NAME: |
| return getModelName(); |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__TARGET_URI: |
| return getTargetURI(); |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__STATE: |
| return getState(); |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__THRESHOLD: |
| return getThreshold(); |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__PREDICATE: |
| return getPredicate(); |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__POPULATION_IDENTIFIER: |
| return getPopulationIdentifier(); |
| } |
| return super.eGet(featureID, resolve, coreType); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| @Override |
| public void eSet(int featureID, Object newValue) { |
| switch (featureID) { |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__MODEL_NAME: |
| setModelName((String)newValue); |
| return; |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__TARGET_URI: |
| setTargetURI((URI)newValue); |
| return; |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__STATE: |
| setState((String)newValue); |
| return; |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__THRESHOLD: |
| setThreshold((Double)newValue); |
| return; |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__PREDICATE: |
| setPredicate((String)newValue); |
| return; |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__POPULATION_IDENTIFIER: |
| setPopulationIdentifier((String)newValue); |
| return; |
| } |
| super.eSet(featureID, newValue); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| @Override |
| public void eUnset(int featureID) { |
| switch (featureID) { |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__MODEL_NAME: |
| setModelName(MODEL_NAME_EDEFAULT); |
| return; |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__TARGET_URI: |
| setTargetURI(TARGET_URI_EDEFAULT); |
| return; |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__STATE: |
| setState(STATE_EDEFAULT); |
| return; |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__THRESHOLD: |
| setThreshold(THRESHOLD_EDEFAULT); |
| return; |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__PREDICATE: |
| setPredicate(PREDICATE_EDEFAULT); |
| return; |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__POPULATION_IDENTIFIER: |
| setPopulationIdentifier(POPULATION_IDENTIFIER_EDEFAULT); |
| return; |
| } |
| super.eUnset(featureID); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| @Override |
| public boolean eIsSet(int featureID) { |
| switch (featureID) { |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__MODEL_NAME: |
| return MODEL_NAME_EDEFAULT == null ? modelName != null : !MODEL_NAME_EDEFAULT.equals(modelName); |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__TARGET_URI: |
| return TARGET_URI_EDEFAULT == null ? targetURI != null : !TARGET_URI_EDEFAULT.equals(targetURI); |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__STATE: |
| return STATE_EDEFAULT == null ? state != null : !STATE_EDEFAULT.equals(state); |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__THRESHOLD: |
| return threshold != THRESHOLD_EDEFAULT; |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__PREDICATE: |
| return PREDICATE_EDEFAULT == null ? predicate != null : !PREDICATE_EDEFAULT.equals(predicate); |
| case DiseasepredicatesPackage.LABEL_VALUE_TEST__POPULATION_IDENTIFIER: |
| return POPULATION_IDENTIFIER_EDEFAULT == null ? populationIdentifier != null : !POPULATION_IDENTIFIER_EDEFAULT.equals(populationIdentifier); |
| } |
| return super.eIsSet(featureID); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| @Override |
| public String toString() { |
| if (eIsProxy()) return super.toString(); |
| |
| StringBuffer result = new StringBuffer(super.toString()); |
| result.append(" (modelName: "); //$NON-NLS-1$ |
| result.append(modelName); |
| result.append(", targetURI: "); //$NON-NLS-1$ |
| result.append(targetURI); |
| result.append(", state: "); //$NON-NLS-1$ |
| result.append(state); |
| result.append(", threshold: "); //$NON-NLS-1$ |
| result.append(threshold); |
| result.append(", predicate: "); //$NON-NLS-1$ |
| result.append(predicate); |
| result.append(", populationIdentifier: "); //$NON-NLS-1$ |
| result.append(populationIdentifier); |
| result.append(')'); |
| return result.toString(); |
| } |
| |
| } //LabelValueTestImpl |
