| /******************************************************************************* |
| * Copyright (c) 2009 IBM Corporation and others. |
| * All rights reserved. This program and the accompanying materials |
| * are made available under the terms of the Eclipse Public License v1.0 |
| * which accompanies this distribution, and is available at |
| * http://www.eclipse.org/legal/epl-v10.html |
| * |
| * Contributors: |
| * IBM Corporation - initial API and implementation |
| *******************************************************************************/ |
| |
| package org.eclipse.stem.analysis.impl; |
| |
| import java.util.ArrayList; |
| import java.util.List; |
| |
| import org.eclipse.emf.ecore.EClass; |
| import org.eclipse.emf.ecore.impl.EObjectImpl; |
| import org.eclipse.stem.analysis.AnalysisPackage; |
| import org.eclipse.stem.analysis.ErrorFunction; |
| import org.eclipse.stem.analysis.ErrorResult; |
| import org.eclipse.stem.analysis.ReferenceScenarioDataMap; |
| import org.eclipse.stem.analysis.States; |
| import org.eclipse.stem.analysis.impl.ReferenceScenarioDataMapImpl.ReferenceScenarioDataInstance; |
| |
| /** |
| * <!-- begin-user-doc --> |
| * An implementation of the model object '<em><b>Error Function</b></em>'. |
| * <!-- end-user-doc --> |
| * <p> |
| * </p> |
| * |
| * @generated |
| */ |
| public class ErrorFunctionImpl extends EObjectImpl implements ErrorFunction { |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| protected ErrorFunctionImpl() { |
| super(); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| @Override |
| protected EClass eStaticClass() { |
| return AnalysisPackage.Literals.ERROR_FUNCTION; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @generated |
| */ |
| public ErrorResult calculateError(ReferenceScenarioDataMap reference, ReferenceScenarioDataMap data) { |
| // TODO: implement this method |
| // Ensure that you remove @generated or mark it @generated NOT |
| throw new UnsupportedOperationException(); |
| } |
| |
| /** |
| * From the dataMap extract a list of infectious |
| * @param dataMap |
| * @return list of infectious people |
| */ |
| public List<Double> getInfectious(ReferenceScenarioDataInstance dataMap) { |
| |
| List<Double> infectious = dataMap.getItotals(); |
| |
| return infectious; |
| } |
| |
| |
| /** |
| * From the dataMap extract a list of infectious |
| * @param dataMap |
| * @return list of infectious people |
| */ |
| public List<Double> getIncidence(ReferenceScenarioDataInstance dataMap) { |
| final String INCIDENCE = States.statesToFit[States.INCIDENCE]; |
| |
| |
| // MUST exist |
| List<String> incidenceList = dataMap.getData(INCIDENCE); |
| assert(incidenceList!=null); |
| |
| List<Double> infectious = new ArrayList<Double>(); |
| for (int i = 0; i < incidenceList.size(); i ++) { |
| |
| double inf = (new Double(incidenceList.get(i))).doubleValue(); |
| infectious.add(new Double(inf)); |
| } |
| return infectious; |
| } |
| |
| /** |
| * From the dataMap extract a list of population values |
| * @param dataMap |
| * @return list of infectious people |
| */ |
| public List<Double> getPopulation(ReferenceScenarioDataInstance dataMap) { |
| final String POPULATION = States.statesToFit[States.POPULATION]; |
| |
| |
| // MUST exist |
| List<String> popList = dataMap.getData(POPULATION); |
| // We should standardize on P for population count |
| if(popList == null) popList = dataMap.getData("Population Count"); |
| assert(popList!=null); |
| |
| List<Double> populations = new ArrayList<Double>(); |
| for (int i = 0; i < popList.size(); i ++) { |
| |
| double inf = (new Double(popList.get(i))).doubleValue(); |
| populations.add(new Double(inf)); |
| } |
| return populations; |
| } |
| |
| } //ErrorFunctionImpl |