Merge "Persist the annotated java file" into develop
diff --git a/org.eclipse.capra.handler.jdt/src/org/eclipse/capra/handler/jdt/JDTAnnotate.java b/org.eclipse.capra.handler.jdt/src/org/eclipse/capra/handler/jdt/JDTAnnotate.java
index ab8a89b..4f617af 100644
--- a/org.eclipse.capra.handler.jdt/src/org/eclipse/capra/handler/jdt/JDTAnnotate.java
+++ b/org.eclipse.capra.handler.jdt/src/org/eclipse/capra/handler/jdt/JDTAnnotate.java
@@ -97,6 +97,7 @@
 
 				String newSource = document.get();
 				cu.getBuffer().setContents(newSource);
+				cu.save(null, false);
 			} catch (JavaModelException e) {
 				throw new AnnotationException(e.getStatus());
 			} catch (MalformedTreeException e) {