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| <pre><span class="sourceLineNo">001</span>/*******************************************************************************<a name="line.1"></a> |
| <span class="sourceLineNo">002</span> * Copyright (c) 2016 Diamond Light Source Ltd. and others.<a name="line.2"></a> |
| <span class="sourceLineNo">003</span> * All rights reserved. This program and the accompanying materials<a name="line.3"></a> |
| <span class="sourceLineNo">004</span> * are made available under the terms of the Eclipse Public License v1.0<a name="line.4"></a> |
| <span class="sourceLineNo">005</span> * which accompanies this distribution, and is available at<a name="line.5"></a> |
| <span class="sourceLineNo">006</span> * http://www.eclipse.org/legal/epl-v10.html<a name="line.6"></a> |
| <span class="sourceLineNo">007</span> *<a name="line.7"></a> |
| <span class="sourceLineNo">008</span> * Contributors:<a name="line.8"></a> |
| <span class="sourceLineNo">009</span> * Diamond Light Source Ltd - initial API and implementation<a name="line.9"></a> |
| <span class="sourceLineNo">010</span> *******************************************************************************/<a name="line.10"></a> |
| <span class="sourceLineNo">011</span>package org.eclipse.january.dataset;<a name="line.11"></a> |
| <span class="sourceLineNo">012</span><a name="line.12"></a> |
| <span class="sourceLineNo">013</span>import java.lang.reflect.Array;<a name="line.13"></a> |
| <span class="sourceLineNo">014</span>import java.util.ArrayList;<a name="line.14"></a> |
| <span class="sourceLineNo">015</span>import java.util.Collection;<a name="line.15"></a> |
| <span class="sourceLineNo">016</span>import java.util.List;<a name="line.16"></a> |
| <span class="sourceLineNo">017</span>import java.util.SortedSet;<a name="line.17"></a> |
| <span class="sourceLineNo">018</span>import java.util.TreeSet;<a name="line.18"></a> |
| <span class="sourceLineNo">019</span><a name="line.19"></a> |
| <span class="sourceLineNo">020</span>public class ShapeUtils {<a name="line.20"></a> |
| <span class="sourceLineNo">021</span><a name="line.21"></a> |
| <span class="sourceLineNo">022</span> private ShapeUtils() {<a name="line.22"></a> |
| <span class="sourceLineNo">023</span> }<a name="line.23"></a> |
| <span class="sourceLineNo">024</span><a name="line.24"></a> |
| <span class="sourceLineNo">025</span> /**<a name="line.25"></a> |
| <span class="sourceLineNo">026</span> * Calculate total number of items in given shape<a name="line.26"></a> |
| <span class="sourceLineNo">027</span> * @param shape<a name="line.27"></a> |
| <span class="sourceLineNo">028</span> * @return size<a name="line.28"></a> |
| <span class="sourceLineNo">029</span> */<a name="line.29"></a> |
| <span class="sourceLineNo">030</span> public static long calcLongSize(final int[] shape) {<a name="line.30"></a> |
| <span class="sourceLineNo">031</span> if (shape == null) { // special case of null-shaped<a name="line.31"></a> |
| <span class="sourceLineNo">032</span> return 0;<a name="line.32"></a> |
| <span class="sourceLineNo">033</span> }<a name="line.33"></a> |
| <span class="sourceLineNo">034</span><a name="line.34"></a> |
| <span class="sourceLineNo">035</span> final int rank = shape.length;<a name="line.35"></a> |
| <span class="sourceLineNo">036</span> if (rank == 0) { // special case of zero-rank shape <a name="line.36"></a> |
| <span class="sourceLineNo">037</span> return 1;<a name="line.37"></a> |
| <span class="sourceLineNo">038</span> }<a name="line.38"></a> |
| <span class="sourceLineNo">039</span> <a name="line.39"></a> |
| <span class="sourceLineNo">040</span> double dsize = 1.0;<a name="line.40"></a> |
| <span class="sourceLineNo">041</span> for (int i = 0; i < rank; i++) {<a name="line.41"></a> |
| <span class="sourceLineNo">042</span> // make sure the indexes isn't zero or negative<a name="line.42"></a> |
| <span class="sourceLineNo">043</span> if (shape[i] == 0) {<a name="line.43"></a> |
| <span class="sourceLineNo">044</span> return 0;<a name="line.44"></a> |
| <span class="sourceLineNo">045</span> } else if (shape[i] < 0) {<a name="line.45"></a> |
| <span class="sourceLineNo">046</span> throw new IllegalArgumentException(String.format(<a name="line.46"></a> |
| <span class="sourceLineNo">047</span> "The %d-th is %d which is not allowed as it is negative", i, shape[i]));<a name="line.47"></a> |
| <span class="sourceLineNo">048</span> }<a name="line.48"></a> |
| <span class="sourceLineNo">049</span> <a name="line.49"></a> |
| <span class="sourceLineNo">050</span> dsize *= shape[i];<a name="line.50"></a> |
| <span class="sourceLineNo">051</span> }<a name="line.51"></a> |
| <span class="sourceLineNo">052</span> <a name="line.52"></a> |
| <span class="sourceLineNo">053</span> // check to see if the size is larger than an integer, i.e. we can't allocate it<a name="line.53"></a> |
| <span class="sourceLineNo">054</span> if (dsize > Long.MAX_VALUE) {<a name="line.54"></a> |
| <span class="sourceLineNo">055</span> throw new IllegalArgumentException("Size of the dataset is too large to allocate");<a name="line.55"></a> |
| <span class="sourceLineNo">056</span> }<a name="line.56"></a> |
| <span class="sourceLineNo">057</span> return (long) dsize;<a name="line.57"></a> |
| <span class="sourceLineNo">058</span> }<a name="line.58"></a> |
| <span class="sourceLineNo">059</span><a name="line.59"></a> |
| <span class="sourceLineNo">060</span> /**<a name="line.60"></a> |
| <span class="sourceLineNo">061</span> * Calculate total number of items in given shape<a name="line.61"></a> |
| <span class="sourceLineNo">062</span> * @param shape<a name="line.62"></a> |
| <span class="sourceLineNo">063</span> * @return size<a name="line.63"></a> |
| <span class="sourceLineNo">064</span> */<a name="line.64"></a> |
| <span class="sourceLineNo">065</span> public static int calcSize(final int[] shape) {<a name="line.65"></a> |
| <span class="sourceLineNo">066</span> long lsize = calcLongSize(shape);<a name="line.66"></a> |
| <span class="sourceLineNo">067</span> <a name="line.67"></a> |
| <span class="sourceLineNo">068</span> // check to see if the size is larger than an integer, i.e. we can't allocate it<a name="line.68"></a> |
| <span class="sourceLineNo">069</span> if (lsize > Integer.MAX_VALUE) {<a name="line.69"></a> |
| <span class="sourceLineNo">070</span> throw new IllegalArgumentException("Size of the dataset is too large to allocate");<a name="line.70"></a> |
| <span class="sourceLineNo">071</span> }<a name="line.71"></a> |
| <span class="sourceLineNo">072</span> return (int) lsize;<a name="line.72"></a> |
| <span class="sourceLineNo">073</span> }<a name="line.73"></a> |
| <span class="sourceLineNo">074</span><a name="line.74"></a> |
| <span class="sourceLineNo">075</span> /**<a name="line.75"></a> |
| <span class="sourceLineNo">076</span> * Check if shapes are broadcast compatible<a name="line.76"></a> |
| <span class="sourceLineNo">077</span> * <a name="line.77"></a> |
| <span class="sourceLineNo">078</span> * @param ashape<a name="line.78"></a> |
| <span class="sourceLineNo">079</span> * @param bshape<a name="line.79"></a> |
| <span class="sourceLineNo">080</span> * @return true if they are compatible<a name="line.80"></a> |
| <span class="sourceLineNo">081</span> */<a name="line.81"></a> |
| <span class="sourceLineNo">082</span> public static boolean areShapesBroadcastCompatible(final int[] ashape, final int[] bshape) {<a name="line.82"></a> |
| <span class="sourceLineNo">083</span> if (ashape == null || bshape == null) {<a name="line.83"></a> |
| <span class="sourceLineNo">084</span> return ashape == bshape;<a name="line.84"></a> |
| <span class="sourceLineNo">085</span> }<a name="line.85"></a> |
| <span class="sourceLineNo">086</span><a name="line.86"></a> |
| <span class="sourceLineNo">087</span> if (ashape.length < bshape.length) {<a name="line.87"></a> |
| <span class="sourceLineNo">088</span> return areShapesBroadcastCompatible(bshape, ashape);<a name="line.88"></a> |
| <span class="sourceLineNo">089</span> }<a name="line.89"></a> |
| <span class="sourceLineNo">090</span> <a name="line.90"></a> |
| <span class="sourceLineNo">091</span> for (int a = ashape.length - bshape.length, b = 0; a < ashape.length && b < bshape.length; a++, b++) {<a name="line.91"></a> |
| <span class="sourceLineNo">092</span> if (ashape[a] != bshape[b] && ashape[a] != 1 && bshape[b] != 1) {<a name="line.92"></a> |
| <span class="sourceLineNo">093</span> return false;<a name="line.93"></a> |
| <span class="sourceLineNo">094</span> }<a name="line.94"></a> |
| <span class="sourceLineNo">095</span> }<a name="line.95"></a> |
| <span class="sourceLineNo">096</span> <a name="line.96"></a> |
| <span class="sourceLineNo">097</span> return true;<a name="line.97"></a> |
| <span class="sourceLineNo">098</span> }<a name="line.98"></a> |
| <span class="sourceLineNo">099</span><a name="line.99"></a> |
| <span class="sourceLineNo">100</span> /**<a name="line.100"></a> |
| <span class="sourceLineNo">101</span> * Check if shapes are compatible, ignoring extra axes of length 1<a name="line.101"></a> |
| <span class="sourceLineNo">102</span> * <a name="line.102"></a> |
| <span class="sourceLineNo">103</span> * @param ashape<a name="line.103"></a> |
| <span class="sourceLineNo">104</span> * @param bshape<a name="line.104"></a> |
| <span class="sourceLineNo">105</span> * @return true if they are compatible<a name="line.105"></a> |
| <span class="sourceLineNo">106</span> */<a name="line.106"></a> |
| <span class="sourceLineNo">107</span> public static boolean areShapesCompatible(final int[] ashape, final int[] bshape) {<a name="line.107"></a> |
| <span class="sourceLineNo">108</span> if (ashape == null || bshape == null) {<a name="line.108"></a> |
| <span class="sourceLineNo">109</span> return ashape == bshape;<a name="line.109"></a> |
| <span class="sourceLineNo">110</span> }<a name="line.110"></a> |
| <span class="sourceLineNo">111</span><a name="line.111"></a> |
| <span class="sourceLineNo">112</span> List<Integer> alist = new ArrayList<Integer>();<a name="line.112"></a> |
| <span class="sourceLineNo">113</span> <a name="line.113"></a> |
| <span class="sourceLineNo">114</span> for (int a : ashape) {<a name="line.114"></a> |
| <span class="sourceLineNo">115</span> if (a > 1) alist.add(a);<a name="line.115"></a> |
| <span class="sourceLineNo">116</span> }<a name="line.116"></a> |
| <span class="sourceLineNo">117</span> <a name="line.117"></a> |
| <span class="sourceLineNo">118</span> final int imax = alist.size();<a name="line.118"></a> |
| <span class="sourceLineNo">119</span> int i = 0;<a name="line.119"></a> |
| <span class="sourceLineNo">120</span> for (int b : bshape) {<a name="line.120"></a> |
| <span class="sourceLineNo">121</span> if (b == 1)<a name="line.121"></a> |
| <span class="sourceLineNo">122</span> continue;<a name="line.122"></a> |
| <span class="sourceLineNo">123</span> if (i >= imax || b != alist.get(i++))<a name="line.123"></a> |
| <span class="sourceLineNo">124</span> return false;<a name="line.124"></a> |
| <span class="sourceLineNo">125</span> }<a name="line.125"></a> |
| <span class="sourceLineNo">126</span> <a name="line.126"></a> |
| <span class="sourceLineNo">127</span> return i == imax;<a name="line.127"></a> |
| <span class="sourceLineNo">128</span> }<a name="line.128"></a> |
| <span class="sourceLineNo">129</span><a name="line.129"></a> |
| <span class="sourceLineNo">130</span> /**<a name="line.130"></a> |
| <span class="sourceLineNo">131</span> * Check if shapes are compatible but skip axis<a name="line.131"></a> |
| <span class="sourceLineNo">132</span> * <a name="line.132"></a> |
| <span class="sourceLineNo">133</span> * @param ashape<a name="line.133"></a> |
| <span class="sourceLineNo">134</span> * @param bshape<a name="line.134"></a> |
| <span class="sourceLineNo">135</span> * @param axis<a name="line.135"></a> |
| <span class="sourceLineNo">136</span> * @return true if they are compatible<a name="line.136"></a> |
| <span class="sourceLineNo">137</span> */<a name="line.137"></a> |
| <span class="sourceLineNo">138</span> public static boolean areShapesCompatible(final int[] ashape, final int[] bshape, final int axis) {<a name="line.138"></a> |
| <span class="sourceLineNo">139</span> if (ashape == null || bshape == null) {<a name="line.139"></a> |
| <span class="sourceLineNo">140</span> return ashape == bshape;<a name="line.140"></a> |
| <span class="sourceLineNo">141</span> }<a name="line.141"></a> |
| <span class="sourceLineNo">142</span><a name="line.142"></a> |
| <span class="sourceLineNo">143</span> if (ashape.length != bshape.length) {<a name="line.143"></a> |
| <span class="sourceLineNo">144</span> return false;<a name="line.144"></a> |
| <span class="sourceLineNo">145</span> }<a name="line.145"></a> |
| <span class="sourceLineNo">146</span> <a name="line.146"></a> |
| <span class="sourceLineNo">147</span> final int rank = ashape.length;<a name="line.147"></a> |
| <span class="sourceLineNo">148</span> for (int i = 0; i < rank; i++) {<a name="line.148"></a> |
| <span class="sourceLineNo">149</span> if (i != axis && ashape[i] != bshape[i]) {<a name="line.149"></a> |
| <span class="sourceLineNo">150</span> return false;<a name="line.150"></a> |
| <span class="sourceLineNo">151</span> }<a name="line.151"></a> |
| <span class="sourceLineNo">152</span> }<a name="line.152"></a> |
| <span class="sourceLineNo">153</span> return true;<a name="line.153"></a> |
| <span class="sourceLineNo">154</span> }<a name="line.154"></a> |
| <span class="sourceLineNo">155</span><a name="line.155"></a> |
| <span class="sourceLineNo">156</span> /**<a name="line.156"></a> |
| <span class="sourceLineNo">157</span> * Remove dimensions of 1 in given shape - from both ends only, if true<a name="line.157"></a> |
| <span class="sourceLineNo">158</span> * <a name="line.158"></a> |
| <span class="sourceLineNo">159</span> * @param oshape<a name="line.159"></a> |
| <span class="sourceLineNo">160</span> * @param onlyFromEnds<a name="line.160"></a> |
| <span class="sourceLineNo">161</span> * @return newly squeezed shape (or original if unsqueezed)<a name="line.161"></a> |
| <span class="sourceLineNo">162</span> */<a name="line.162"></a> |
| <span class="sourceLineNo">163</span> public static int[] squeezeShape(final int[] oshape, boolean onlyFromEnds) {<a name="line.163"></a> |
| <span class="sourceLineNo">164</span> int unitDims = 0;<a name="line.164"></a> |
| <span class="sourceLineNo">165</span> int rank = oshape.length;<a name="line.165"></a> |
| <span class="sourceLineNo">166</span> int start = 0;<a name="line.166"></a> |
| <span class="sourceLineNo">167</span> <a name="line.167"></a> |
| <span class="sourceLineNo">168</span> if (onlyFromEnds) {<a name="line.168"></a> |
| <span class="sourceLineNo">169</span> int i = rank - 1;<a name="line.169"></a> |
| <span class="sourceLineNo">170</span> for (; i >= 0; i--) {<a name="line.170"></a> |
| <span class="sourceLineNo">171</span> if (oshape[i] == 1) {<a name="line.171"></a> |
| <span class="sourceLineNo">172</span> unitDims++;<a name="line.172"></a> |
| <span class="sourceLineNo">173</span> } else {<a name="line.173"></a> |
| <span class="sourceLineNo">174</span> break;<a name="line.174"></a> |
| <span class="sourceLineNo">175</span> }<a name="line.175"></a> |
| <span class="sourceLineNo">176</span> }<a name="line.176"></a> |
| <span class="sourceLineNo">177</span> for (int j = 0; j <= i; j++) {<a name="line.177"></a> |
| <span class="sourceLineNo">178</span> if (oshape[j] == 1) {<a name="line.178"></a> |
| <span class="sourceLineNo">179</span> unitDims++;<a name="line.179"></a> |
| <span class="sourceLineNo">180</span> } else {<a name="line.180"></a> |
| <span class="sourceLineNo">181</span> start = j;<a name="line.181"></a> |
| <span class="sourceLineNo">182</span> break;<a name="line.182"></a> |
| <span class="sourceLineNo">183</span> }<a name="line.183"></a> |
| <span class="sourceLineNo">184</span> }<a name="line.184"></a> |
| <span class="sourceLineNo">185</span> } else {<a name="line.185"></a> |
| <span class="sourceLineNo">186</span> for (int i = 0; i < rank; i++) {<a name="line.186"></a> |
| <span class="sourceLineNo">187</span> if (oshape[i] == 1) {<a name="line.187"></a> |
| <span class="sourceLineNo">188</span> unitDims++;<a name="line.188"></a> |
| <span class="sourceLineNo">189</span> }<a name="line.189"></a> |
| <span class="sourceLineNo">190</span> }<a name="line.190"></a> |
| <span class="sourceLineNo">191</span> }<a name="line.191"></a> |
| <span class="sourceLineNo">192</span> <a name="line.192"></a> |
| <span class="sourceLineNo">193</span> if (unitDims == 0) {<a name="line.193"></a> |
| <span class="sourceLineNo">194</span> return oshape;<a name="line.194"></a> |
| <span class="sourceLineNo">195</span> }<a name="line.195"></a> |
| <span class="sourceLineNo">196</span> <a name="line.196"></a> |
| <span class="sourceLineNo">197</span> int[] newDims = new int[rank - unitDims];<a name="line.197"></a> |
| <span class="sourceLineNo">198</span> if (unitDims == rank)<a name="line.198"></a> |
| <span class="sourceLineNo">199</span> return newDims; // zero-rank dataset<a name="line.199"></a> |
| <span class="sourceLineNo">200</span> <a name="line.200"></a> |
| <span class="sourceLineNo">201</span> if (onlyFromEnds) {<a name="line.201"></a> |
| <span class="sourceLineNo">202</span> rank = newDims.length;<a name="line.202"></a> |
| <span class="sourceLineNo">203</span> for (int i = 0; i < rank; i++) {<a name="line.203"></a> |
| <span class="sourceLineNo">204</span> newDims[i] = oshape[i+start];<a name="line.204"></a> |
| <span class="sourceLineNo">205</span> }<a name="line.205"></a> |
| <span class="sourceLineNo">206</span> } else {<a name="line.206"></a> |
| <span class="sourceLineNo">207</span> int j = 0;<a name="line.207"></a> |
| <span class="sourceLineNo">208</span> for (int i = 0; i < rank; i++) {<a name="line.208"></a> |
| <span class="sourceLineNo">209</span> if (oshape[i] > 1) {<a name="line.209"></a> |
| <span class="sourceLineNo">210</span> newDims[j++] = oshape[i];<a name="line.210"></a> |
| <span class="sourceLineNo">211</span> if (j >= newDims.length)<a name="line.211"></a> |
| <span class="sourceLineNo">212</span> break;<a name="line.212"></a> |
| <span class="sourceLineNo">213</span> }<a name="line.213"></a> |
| <span class="sourceLineNo">214</span> }<a name="line.214"></a> |
| <span class="sourceLineNo">215</span> }<a name="line.215"></a> |
| <span class="sourceLineNo">216</span> <a name="line.216"></a> |
| <span class="sourceLineNo">217</span> return newDims;<a name="line.217"></a> |
| <span class="sourceLineNo">218</span> }<a name="line.218"></a> |
| <span class="sourceLineNo">219</span><a name="line.219"></a> |
| <span class="sourceLineNo">220</span> /**<a name="line.220"></a> |
| <span class="sourceLineNo">221</span> * Remove dimension of 1 in given shape<a name="line.221"></a> |
| <span class="sourceLineNo">222</span> * <a name="line.222"></a> |
| <span class="sourceLineNo">223</span> * @param oshape<a name="line.223"></a> |
| <span class="sourceLineNo">224</span> * @param axis<a name="line.224"></a> |
| <span class="sourceLineNo">225</span> * @return newly squeezed shape<a name="line.225"></a> |
| <span class="sourceLineNo">226</span> */<a name="line.226"></a> |
| <span class="sourceLineNo">227</span> public static int[] squeezeShape(final int[] oshape, int axis) {<a name="line.227"></a> |
| <span class="sourceLineNo">228</span> if (oshape == null) {<a name="line.228"></a> |
| <span class="sourceLineNo">229</span> return null;<a name="line.229"></a> |
| <span class="sourceLineNo">230</span> }<a name="line.230"></a> |
| <span class="sourceLineNo">231</span><a name="line.231"></a> |
| <span class="sourceLineNo">232</span> final int rank = oshape.length;<a name="line.232"></a> |
| <span class="sourceLineNo">233</span> if (rank == 0) {<a name="line.233"></a> |
| <span class="sourceLineNo">234</span> return new int[0];<a name="line.234"></a> |
| <span class="sourceLineNo">235</span> }<a name="line.235"></a> |
| <span class="sourceLineNo">236</span> if (axis < 0) {<a name="line.236"></a> |
| <span class="sourceLineNo">237</span> axis += rank;<a name="line.237"></a> |
| <span class="sourceLineNo">238</span> }<a name="line.238"></a> |
| <span class="sourceLineNo">239</span> if (axis < 0 || axis >= rank) {<a name="line.239"></a> |
| <span class="sourceLineNo">240</span> throw new IllegalArgumentException("Axis argument is outside allowed range");<a name="line.240"></a> |
| <span class="sourceLineNo">241</span> }<a name="line.241"></a> |
| <span class="sourceLineNo">242</span> int[] nshape = new int[rank-1];<a name="line.242"></a> |
| <span class="sourceLineNo">243</span> for (int i = 0; i < axis; i++) {<a name="line.243"></a> |
| <span class="sourceLineNo">244</span> nshape[i] = oshape[i];<a name="line.244"></a> |
| <span class="sourceLineNo">245</span> }<a name="line.245"></a> |
| <span class="sourceLineNo">246</span> for (int i = axis+1; i < rank; i++) {<a name="line.246"></a> |
| <span class="sourceLineNo">247</span> nshape[i-1] = oshape[i];<a name="line.247"></a> |
| <span class="sourceLineNo">248</span> }<a name="line.248"></a> |
| <span class="sourceLineNo">249</span> return nshape;<a name="line.249"></a> |
| <span class="sourceLineNo">250</span> }<a name="line.250"></a> |
| <span class="sourceLineNo">251</span><a name="line.251"></a> |
| <span class="sourceLineNo">252</span> /**<a name="line.252"></a> |
| <span class="sourceLineNo">253</span> * Get shape from object (array or list supported)<a name="line.253"></a> |
| <span class="sourceLineNo">254</span> * @param obj<a name="line.254"></a> |
| <span class="sourceLineNo">255</span> * @return shape can be null if obj is null<a name="line.255"></a> |
| <span class="sourceLineNo">256</span> */<a name="line.256"></a> |
| <span class="sourceLineNo">257</span> public static int[] getShapeFromObject(final Object obj) {<a name="line.257"></a> |
| <span class="sourceLineNo">258</span> if (obj == null) {<a name="line.258"></a> |
| <span class="sourceLineNo">259</span> return null;<a name="line.259"></a> |
| <span class="sourceLineNo">260</span> }<a name="line.260"></a> |
| <span class="sourceLineNo">261</span><a name="line.261"></a> |
| <span class="sourceLineNo">262</span> ArrayList<Integer> lshape = new ArrayList<Integer>();<a name="line.262"></a> |
| <span class="sourceLineNo">263</span> getShapeFromObj(lshape, obj, 0);<a name="line.263"></a> |
| <span class="sourceLineNo">264</span><a name="line.264"></a> |
| <span class="sourceLineNo">265</span> final int rank = lshape.size();<a name="line.265"></a> |
| <span class="sourceLineNo">266</span> final int[] shape = new int[rank];<a name="line.266"></a> |
| <span class="sourceLineNo">267</span> for (int i = 0; i < rank; i++) {<a name="line.267"></a> |
| <span class="sourceLineNo">268</span> shape[i] = lshape.get(i);<a name="line.268"></a> |
| <span class="sourceLineNo">269</span> }<a name="line.269"></a> |
| <span class="sourceLineNo">270</span> <a name="line.270"></a> |
| <span class="sourceLineNo">271</span> return shape;<a name="line.271"></a> |
| <span class="sourceLineNo">272</span> }<a name="line.272"></a> |
| <span class="sourceLineNo">273</span><a name="line.273"></a> |
| <span class="sourceLineNo">274</span> /**<a name="line.274"></a> |
| <span class="sourceLineNo">275</span> * Get shape from object<a name="line.275"></a> |
| <span class="sourceLineNo">276</span> * @param ldims<a name="line.276"></a> |
| <span class="sourceLineNo">277</span> * @param obj<a name="line.277"></a> |
| <span class="sourceLineNo">278</span> * @param depth<a name="line.278"></a> |
| <span class="sourceLineNo">279</span> * @return true if there is a possibility of differing lengths<a name="line.279"></a> |
| <span class="sourceLineNo">280</span> */<a name="line.280"></a> |
| <span class="sourceLineNo">281</span> private static boolean getShapeFromObj(final ArrayList<Integer> ldims, Object obj, int depth) {<a name="line.281"></a> |
| <span class="sourceLineNo">282</span> if (obj == null)<a name="line.282"></a> |
| <span class="sourceLineNo">283</span> return true;<a name="line.283"></a> |
| <span class="sourceLineNo">284</span> <a name="line.284"></a> |
| <span class="sourceLineNo">285</span> if (obj instanceof List<?>) {<a name="line.285"></a> |
| <span class="sourceLineNo">286</span> List<?> jl = (List<?>) obj;<a name="line.286"></a> |
| <span class="sourceLineNo">287</span> int l = jl.size();<a name="line.287"></a> |
| <span class="sourceLineNo">288</span> updateShape(ldims, depth, l);<a name="line.288"></a> |
| <span class="sourceLineNo">289</span> for (int i = 0; i < l; i++) {<a name="line.289"></a> |
| <span class="sourceLineNo">290</span> Object lo = jl.get(i);<a name="line.290"></a> |
| <span class="sourceLineNo">291</span> if (!getShapeFromObj(ldims, lo, depth + 1)) {<a name="line.291"></a> |
| <span class="sourceLineNo">292</span> break;<a name="line.292"></a> |
| <span class="sourceLineNo">293</span> }<a name="line.293"></a> |
| <span class="sourceLineNo">294</span> }<a name="line.294"></a> |
| <span class="sourceLineNo">295</span> return true;<a name="line.295"></a> |
| <span class="sourceLineNo">296</span> }<a name="line.296"></a> |
| <span class="sourceLineNo">297</span> Class<? extends Object> ca = obj.getClass().getComponentType();<a name="line.297"></a> |
| <span class="sourceLineNo">298</span> if (ca != null) {<a name="line.298"></a> |
| <span class="sourceLineNo">299</span> final int l = Array.getLength(obj);<a name="line.299"></a> |
| <span class="sourceLineNo">300</span> updateShape(ldims, depth, l);<a name="line.300"></a> |
| <span class="sourceLineNo">301</span> if (DTypeUtils.isClassSupportedAsElement(ca)) {<a name="line.301"></a> |
| <span class="sourceLineNo">302</span> return true;<a name="line.302"></a> |
| <span class="sourceLineNo">303</span> }<a name="line.303"></a> |
| <span class="sourceLineNo">304</span> for (int i = 0; i < l; i++) {<a name="line.304"></a> |
| <span class="sourceLineNo">305</span> Object lo = Array.get(obj, i);<a name="line.305"></a> |
| <span class="sourceLineNo">306</span> if (!getShapeFromObj(ldims, lo, depth + 1)) {<a name="line.306"></a> |
| <span class="sourceLineNo">307</span> break;<a name="line.307"></a> |
| <span class="sourceLineNo">308</span> }<a name="line.308"></a> |
| <span class="sourceLineNo">309</span> }<a name="line.309"></a> |
| <span class="sourceLineNo">310</span> return true;<a name="line.310"></a> |
| <span class="sourceLineNo">311</span> } else if (obj instanceof IDataset) {<a name="line.311"></a> |
| <span class="sourceLineNo">312</span> int[] s = ((IDataset) obj).getShape();<a name="line.312"></a> |
| <span class="sourceLineNo">313</span> for (int i = 0; i < s.length; i++) {<a name="line.313"></a> |
| <span class="sourceLineNo">314</span> updateShape(ldims, depth++, s[i]);<a name="line.314"></a> |
| <span class="sourceLineNo">315</span> }<a name="line.315"></a> |
| <span class="sourceLineNo">316</span> return true;<a name="line.316"></a> |
| <span class="sourceLineNo">317</span> } else {<a name="line.317"></a> |
| <span class="sourceLineNo">318</span> return false; // not an array of any type<a name="line.318"></a> |
| <span class="sourceLineNo">319</span> }<a name="line.319"></a> |
| <span class="sourceLineNo">320</span> }<a name="line.320"></a> |
| <span class="sourceLineNo">321</span><a name="line.321"></a> |
| <span class="sourceLineNo">322</span> private static void updateShape(final ArrayList<Integer> ldims, final int depth, final int l) {<a name="line.322"></a> |
| <span class="sourceLineNo">323</span> if (depth >= ldims.size()) {<a name="line.323"></a> |
| <span class="sourceLineNo">324</span> ldims.add(l);<a name="line.324"></a> |
| <span class="sourceLineNo">325</span> } else if (l > ldims.get(depth)) {<a name="line.325"></a> |
| <span class="sourceLineNo">326</span> ldims.set(depth, l);<a name="line.326"></a> |
| <span class="sourceLineNo">327</span> }<a name="line.327"></a> |
| <span class="sourceLineNo">328</span> }<a name="line.328"></a> |
| <span class="sourceLineNo">329</span><a name="line.329"></a> |
| <span class="sourceLineNo">330</span> /**<a name="line.330"></a> |
| <span class="sourceLineNo">331</span> * Get n-D position from given index<a name="line.331"></a> |
| <span class="sourceLineNo">332</span> * @param n index<a name="line.332"></a> |
| <span class="sourceLineNo">333</span> * @param shape<a name="line.333"></a> |
| <span class="sourceLineNo">334</span> * @return n-D position<a name="line.334"></a> |
| <span class="sourceLineNo">335</span> */<a name="line.335"></a> |
| <span class="sourceLineNo">336</span> public static int[] getNDPositionFromShape(int n, int[] shape) {<a name="line.336"></a> |
| <span class="sourceLineNo">337</span> if (shape == null) {<a name="line.337"></a> |
| <span class="sourceLineNo">338</span> return null;<a name="line.338"></a> |
| <span class="sourceLineNo">339</span> }<a name="line.339"></a> |
| <span class="sourceLineNo">340</span><a name="line.340"></a> |
| <span class="sourceLineNo">341</span> int rank = shape.length;<a name="line.341"></a> |
| <span class="sourceLineNo">342</span> if (rank == 0) {<a name="line.342"></a> |
| <span class="sourceLineNo">343</span> return new int[0];<a name="line.343"></a> |
| <span class="sourceLineNo">344</span> }<a name="line.344"></a> |
| <span class="sourceLineNo">345</span><a name="line.345"></a> |
| <span class="sourceLineNo">346</span> if (rank == 1) {<a name="line.346"></a> |
| <span class="sourceLineNo">347</span> return new int[] { n };<a name="line.347"></a> |
| <span class="sourceLineNo">348</span> }<a name="line.348"></a> |
| <span class="sourceLineNo">349</span><a name="line.349"></a> |
| <span class="sourceLineNo">350</span> int[] output = new int[rank];<a name="line.350"></a> |
| <span class="sourceLineNo">351</span> for (rank--; rank > 0; rank--) {<a name="line.351"></a> |
| <span class="sourceLineNo">352</span> output[rank] = n % shape[rank];<a name="line.352"></a> |
| <span class="sourceLineNo">353</span> n /= shape[rank];<a name="line.353"></a> |
| <span class="sourceLineNo">354</span> }<a name="line.354"></a> |
| <span class="sourceLineNo">355</span> output[0] = n;<a name="line.355"></a> |
| <span class="sourceLineNo">356</span> <a name="line.356"></a> |
| <span class="sourceLineNo">357</span> return output;<a name="line.357"></a> |
| <span class="sourceLineNo">358</span> }<a name="line.358"></a> |
| <span class="sourceLineNo">359</span><a name="line.359"></a> |
| <span class="sourceLineNo">360</span> /**<a name="line.360"></a> |
| <span class="sourceLineNo">361</span> * Get flattened view index of given position <a name="line.361"></a> |
| <span class="sourceLineNo">362</span> * @param shape<a name="line.362"></a> |
| <span class="sourceLineNo">363</span> * @param pos<a name="line.363"></a> |
| <span class="sourceLineNo">364</span> * the integer array specifying the n-D position<a name="line.364"></a> |
| <span class="sourceLineNo">365</span> * @return the index on the flattened dataset<a name="line.365"></a> |
| <span class="sourceLineNo">366</span> */<a name="line.366"></a> |
| <span class="sourceLineNo">367</span> public static int getFlat1DIndex(final int[] shape, final int[] pos) {<a name="line.367"></a> |
| <span class="sourceLineNo">368</span> final int imax = pos.length;<a name="line.368"></a> |
| <span class="sourceLineNo">369</span> if (imax == 0) {<a name="line.369"></a> |
| <span class="sourceLineNo">370</span> return 0;<a name="line.370"></a> |
| <span class="sourceLineNo">371</span> }<a name="line.371"></a> |
| <span class="sourceLineNo">372</span> <a name="line.372"></a> |
| <span class="sourceLineNo">373</span> return AbstractDataset.get1DIndexFromShape(shape, pos);<a name="line.373"></a> |
| <span class="sourceLineNo">374</span> }<a name="line.374"></a> |
| <span class="sourceLineNo">375</span><a name="line.375"></a> |
| <span class="sourceLineNo">376</span> /**<a name="line.376"></a> |
| <span class="sourceLineNo">377</span> * This function takes a dataset and checks its shape against another dataset. If they are both of the same size,<a name="line.377"></a> |
| <span class="sourceLineNo">378</span> * then this returns with no error, if there is a problem, then an error is thrown.<a name="line.378"></a> |
| <span class="sourceLineNo">379</span> * <a name="line.379"></a> |
| <span class="sourceLineNo">380</span> * @param g<a name="line.380"></a> |
| <span class="sourceLineNo">381</span> * The first dataset to be compared<a name="line.381"></a> |
| <span class="sourceLineNo">382</span> * @param h<a name="line.382"></a> |
| <span class="sourceLineNo">383</span> * The second dataset to be compared<a name="line.383"></a> |
| <span class="sourceLineNo">384</span> * @throws IllegalArgumentException<a name="line.384"></a> |
| <span class="sourceLineNo">385</span> * This will be thrown if there is a problem with the compatibility<a name="line.385"></a> |
| <span class="sourceLineNo">386</span> */<a name="line.386"></a> |
| <span class="sourceLineNo">387</span> public static void checkCompatibility(final ILazyDataset g, final ILazyDataset h) throws IllegalArgumentException {<a name="line.387"></a> |
| <span class="sourceLineNo">388</span> if (!areShapesCompatible(g.getShape(), h.getShape())) {<a name="line.388"></a> |
| <span class="sourceLineNo">389</span> throw new IllegalArgumentException("Shapes do not match");<a name="line.389"></a> |
| <span class="sourceLineNo">390</span> }<a name="line.390"></a> |
| <span class="sourceLineNo">391</span> }<a name="line.391"></a> |
| <span class="sourceLineNo">392</span><a name="line.392"></a> |
| <span class="sourceLineNo">393</span> /**<a name="line.393"></a> |
| <span class="sourceLineNo">394</span> * Check that axis is in range [-rank,rank)<a name="line.394"></a> |
| <span class="sourceLineNo">395</span> * <a name="line.395"></a> |
| <span class="sourceLineNo">396</span> * @param rank<a name="line.396"></a> |
| <span class="sourceLineNo">397</span> * @param axis<a name="line.397"></a> |
| <span class="sourceLineNo">398</span> * @return sanitized axis in range [0, rank)<a name="line.398"></a> |
| <span class="sourceLineNo">399</span> * @since 2.1<a name="line.399"></a> |
| <span class="sourceLineNo">400</span> */<a name="line.400"></a> |
| <span class="sourceLineNo">401</span> public static int checkAxis(int rank, int axis) {<a name="line.401"></a> |
| <span class="sourceLineNo">402</span> if (axis < 0) {<a name="line.402"></a> |
| <span class="sourceLineNo">403</span> axis += rank;<a name="line.403"></a> |
| <span class="sourceLineNo">404</span> }<a name="line.404"></a> |
| <span class="sourceLineNo">405</span> <a name="line.405"></a> |
| <span class="sourceLineNo">406</span> if (axis < 0 || axis >= rank) {<a name="line.406"></a> |
| <span class="sourceLineNo">407</span> throw new IllegalArgumentException("Axis " + axis + " given is out of range [0, " + rank + ")");<a name="line.407"></a> |
| <span class="sourceLineNo">408</span> }<a name="line.408"></a> |
| <span class="sourceLineNo">409</span> return axis;<a name="line.409"></a> |
| <span class="sourceLineNo">410</span> }<a name="line.410"></a> |
| <span class="sourceLineNo">411</span><a name="line.411"></a> |
| <span class="sourceLineNo">412</span> private static int[] convert(Collection<Integer> list) {<a name="line.412"></a> |
| <span class="sourceLineNo">413</span> int[] array = new int[list.size()];<a name="line.413"></a> |
| <span class="sourceLineNo">414</span> int i = 0;<a name="line.414"></a> |
| <span class="sourceLineNo">415</span> for (Integer l : list) {<a name="line.415"></a> |
| <span class="sourceLineNo">416</span> array[i++] = l;<a name="line.416"></a> |
| <span class="sourceLineNo">417</span> }<a name="line.417"></a> |
| <span class="sourceLineNo">418</span> return array;<a name="line.418"></a> |
| <span class="sourceLineNo">419</span> }<a name="line.419"></a> |
| <span class="sourceLineNo">420</span><a name="line.420"></a> |
| <span class="sourceLineNo">421</span> /**<a name="line.421"></a> |
| <span class="sourceLineNo">422</span> * Check that all axes are in range [-rank,rank)<a name="line.422"></a> |
| <span class="sourceLineNo">423</span> * @param rank<a name="line.423"></a> |
| <span class="sourceLineNo">424</span> * @param axes<a name="line.424"></a> |
| <span class="sourceLineNo">425</span> * @return sanitized axes in range [0, rank) and sorted in increasing order<a name="line.425"></a> |
| <span class="sourceLineNo">426</span> * @since 2.2<a name="line.426"></a> |
| <span class="sourceLineNo">427</span> */<a name="line.427"></a> |
| <span class="sourceLineNo">428</span> public static int[] checkAxes(int rank, int... axes) {<a name="line.428"></a> |
| <span class="sourceLineNo">429</span> return convert(sanitizeAxes(rank, axes));<a name="line.429"></a> |
| <span class="sourceLineNo">430</span> }<a name="line.430"></a> |
| <span class="sourceLineNo">431</span><a name="line.431"></a> |
| <span class="sourceLineNo">432</span> /**<a name="line.432"></a> |
| <span class="sourceLineNo">433</span> * Check that all axes are in range [-rank,rank)<a name="line.433"></a> |
| <span class="sourceLineNo">434</span> * @param rank<a name="line.434"></a> |
| <span class="sourceLineNo">435</span> * @param axes<a name="line.435"></a> |
| <span class="sourceLineNo">436</span> * @return sanitized axes in range [0, rank) and sorted in increasing order<a name="line.436"></a> |
| <span class="sourceLineNo">437</span> * @since 2.2<a name="line.437"></a> |
| <span class="sourceLineNo">438</span> */<a name="line.438"></a> |
| <span class="sourceLineNo">439</span> private static SortedSet<Integer> sanitizeAxes(int rank, int... axes) {<a name="line.439"></a> |
| <span class="sourceLineNo">440</span> SortedSet<Integer> nAxes = new TreeSet<>(); <a name="line.440"></a> |
| <span class="sourceLineNo">441</span> for (int i = 0; i < axes.length; i++) {<a name="line.441"></a> |
| <span class="sourceLineNo">442</span> nAxes.add(checkAxis(rank, axes[i]));<a name="line.442"></a> |
| <span class="sourceLineNo">443</span> }<a name="line.443"></a> |
| <span class="sourceLineNo">444</span><a name="line.444"></a> |
| <span class="sourceLineNo">445</span> return nAxes;<a name="line.445"></a> |
| <span class="sourceLineNo">446</span> }<a name="line.446"></a> |
| <span class="sourceLineNo">447</span><a name="line.447"></a> |
| <span class="sourceLineNo">448</span> /**<a name="line.448"></a> |
| <span class="sourceLineNo">449</span> * @param rank<a name="line.449"></a> |
| <span class="sourceLineNo">450</span> * @param axes<a name="line.450"></a> |
| <span class="sourceLineNo">451</span> * @return remaining axes not given by input<a name="line.451"></a> |
| <span class="sourceLineNo">452</span> * @since 2.2<a name="line.452"></a> |
| <span class="sourceLineNo">453</span> */<a name="line.453"></a> |
| <span class="sourceLineNo">454</span> public static int[] getRemainingAxes(int rank, int... axes) {<a name="line.454"></a> |
| <span class="sourceLineNo">455</span> SortedSet<Integer> nAxes = sanitizeAxes(rank, axes);<a name="line.455"></a> |
| <span class="sourceLineNo">456</span><a name="line.456"></a> |
| <span class="sourceLineNo">457</span> int[] remains = new int[rank - axes.length];<a name="line.457"></a> |
| <span class="sourceLineNo">458</span> int j = 0;<a name="line.458"></a> |
| <span class="sourceLineNo">459</span> for (int i = 0; i < rank; i++) {<a name="line.459"></a> |
| <span class="sourceLineNo">460</span> if (!nAxes.contains(i)) {<a name="line.460"></a> |
| <span class="sourceLineNo">461</span> remains[j++] = i;<a name="line.461"></a> |
| <span class="sourceLineNo">462</span> }<a name="line.462"></a> |
| <span class="sourceLineNo">463</span> }<a name="line.463"></a> |
| <span class="sourceLineNo">464</span> return remains;<a name="line.464"></a> |
| <span class="sourceLineNo">465</span> }<a name="line.465"></a> |
| <span class="sourceLineNo">466</span><a name="line.466"></a> |
| <span class="sourceLineNo">467</span> /**<a name="line.467"></a> |
| <span class="sourceLineNo">468</span> * Remove axes from shape<a name="line.468"></a> |
| <span class="sourceLineNo">469</span> * @param shape<a name="line.469"></a> |
| <span class="sourceLineNo">470</span> * @param axes<a name="line.470"></a> |
| <span class="sourceLineNo">471</span> * @return reduced shape<a name="line.471"></a> |
| <span class="sourceLineNo">472</span> * @since 2.2<a name="line.472"></a> |
| <span class="sourceLineNo">473</span> */<a name="line.473"></a> |
| <span class="sourceLineNo">474</span> public static int[] reduceShape(int[] shape, int... axes) {<a name="line.474"></a> |
| <span class="sourceLineNo">475</span> int[] remain = getRemainingAxes(shape.length, axes);<a name="line.475"></a> |
| <span class="sourceLineNo">476</span> for (int i = 0; i < remain.length; i++) {<a name="line.476"></a> |
| <span class="sourceLineNo">477</span> int a = remain[i];<a name="line.477"></a> |
| <span class="sourceLineNo">478</span> remain[i] = shape[a];<a name="line.478"></a> |
| <span class="sourceLineNo">479</span> }<a name="line.479"></a> |
| <span class="sourceLineNo">480</span> return remain;<a name="line.480"></a> |
| <span class="sourceLineNo">481</span> }<a name="line.481"></a> |
| <span class="sourceLineNo">482</span><a name="line.482"></a> |
| <span class="sourceLineNo">483</span> /**<a name="line.483"></a> |
| <span class="sourceLineNo">484</span> * Set reduced axes to 1<a name="line.484"></a> |
| <span class="sourceLineNo">485</span> * @param shape<a name="line.485"></a> |
| <span class="sourceLineNo">486</span> * @param axes<a name="line.486"></a> |
| <span class="sourceLineNo">487</span> * @return shape with same rank<a name="line.487"></a> |
| <span class="sourceLineNo">488</span> * @since 2.2<a name="line.488"></a> |
| <span class="sourceLineNo">489</span> */<a name="line.489"></a> |
| <span class="sourceLineNo">490</span> public static int[] getReducedShapeKeepRank(int[] shape, int... axes) {<a name="line.490"></a> |
| <span class="sourceLineNo">491</span> int[] keep = shape.clone();<a name="line.491"></a> |
| <span class="sourceLineNo">492</span> axes = checkAxes(shape.length, axes);<a name="line.492"></a> |
| <span class="sourceLineNo">493</span> for (int i : axes) {<a name="line.493"></a> |
| <span class="sourceLineNo">494</span> keep[i] = 1;<a name="line.494"></a> |
| <span class="sourceLineNo">495</span> }<a name="line.495"></a> |
| <span class="sourceLineNo">496</span> return keep;<a name="line.496"></a> |
| <span class="sourceLineNo">497</span> }<a name="line.497"></a> |
| <span class="sourceLineNo">498</span>}<a name="line.498"></a> |
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| </pre> |
| </div> |
| </body> |
| </html> |
