| /******************************************************************************* | |
| * Copyright (c) 2009, 2011 IBM Corporation and others. | |
| * All rights reserved. This program and the accompanying materials | |
| * are made available under the terms of the Eclipse Public License v1.0 | |
| * which accompanies this distribution, and is available at | |
| * http://www.eclipse.org/legal/epl-v10.html | |
| * | |
| * Contributors: | |
| * IBM Corporation - initial API and implementation | |
| *******************************************************************************/ | |
| package org.eclipse.mdht.uml.cda.tests; | |
| import java.io.File; | |
| import java.io.FileInputStream; | |
| import java.io.FileNotFoundException; | |
| import java.io.FileOutputStream; | |
| import java.io.IOException; | |
| import java.util.Collections; | |
| import java.util.HashMap; | |
| import java.util.Map; | |
| import org.eclipse.emf.common.util.URI; | |
| import org.eclipse.emf.ecore.resource.Resource; | |
| import org.eclipse.emf.ecore.resource.ResourceSet; | |
| import org.eclipse.emf.ecore.resource.impl.ResourceSetImpl; | |
| import org.eclipse.emf.ecore.xmi.impl.XMLResourceFactoryImpl; | |
| import org.eclipse.emf.ecore.xmi.impl.XMLResourceImpl; | |
| import org.eclipse.mdht.uml.cda.ActReference; | |
| import org.eclipse.mdht.uml.cda.CDAFactory; | |
| import org.eclipse.mdht.uml.cda.ClinicalDocument; | |
| import org.eclipse.mdht.uml.cda.Component4; | |
| import org.eclipse.mdht.uml.cda.Encounter; | |
| import org.eclipse.mdht.uml.cda.Entry; | |
| import org.eclipse.mdht.uml.cda.InFulfillmentOf1; | |
| import org.eclipse.mdht.uml.cda.Section; | |
| import org.eclipse.mdht.uml.cda.util.CDAUtil; | |
| import org.eclipse.mdht.uml.hl7.datatypes.CE; | |
| import org.eclipse.mdht.uml.hl7.datatypes.DatatypesFactory; | |
| import org.eclipse.mdht.uml.hl7.vocab.ActRelationshipFulfills; | |
| import org.eclipse.mdht.uml.hl7.vocab.EntityDeterminer; | |
| public class Main2 { | |
| public static void saveData(String fileName, ClinicalDocument data) throws IOException { | |
| Resource.Factory.Registry reg = Resource.Factory.Registry.INSTANCE; | |
| Map<String, Object> m = reg.getExtensionToFactoryMap(); | |
| m.put("*", new XMLResourceFactoryImpl()); | |
| ResourceSet resSet = new ResourceSetImpl(); | |
| Resource resource = resSet.createResource(URI.createFileURI(fileName)); | |
| resource.getContents().add(data); | |
| resource.save(Collections.EMPTY_MAP); | |
| } | |
| public static ClinicalDocument loadData(String fileName) throws FileNotFoundException, IOException { | |
| XMLResourceImpl resource = new XMLResourceImpl(); | |
| File source = new File(fileName); | |
| resource.load(new FileInputStream(source), new HashMap<>()); | |
| ClinicalDocument data = (ClinicalDocument) resource.getContents().get(0); | |
| return data; | |
| } | |
| public static void main(String[] args) throws Exception { | |
| ClinicalDocument doc = CDAFactory.eINSTANCE.createClinicalDocument(); | |
| Section section = CDAFactory.eINSTANCE.createSection(); | |
| doc.addSection(section); | |
| Encounter encounter = CDAFactory.eINSTANCE.createEncounter(); | |
| encounter.setEffectiveTime(DatatypesFactory.eINSTANCE.createIVL_TS()); | |
| encounter.getSDTCDischargeDispositionCodes().add(DatatypesFactory.eINSTANCE.createCE("1", "1")); | |
| encounter.getSDTCDischargeDispositionCodes().add(DatatypesFactory.eINSTANCE.createCE("2", "1")); | |
| encounter.getSDTCDischargeDispositionCodes().add(DatatypesFactory.eINSTANCE.createCE("3", "1")); | |
| encounter.getSDTCDischargeDispositionCodes().add(DatatypesFactory.eINSTANCE.createCE("4", "1")); | |
| encounter.getSDTCDischargeDispositionCodes().add(DatatypesFactory.eINSTANCE.createCE("5", "1")); | |
| encounter.getSDTCDischargeDispositionCodes().add(DatatypesFactory.eINSTANCE.createCE("6", "1")); | |
| InFulfillmentOf1 ff = CDAFactory.eINSTANCE.createInFulfillmentOf1(); | |
| ActReference ar = CDAFactory.eINSTANCE.createActReference(); | |
| ar.setDeterminerCode(EntityDeterminer.INSTANCE); | |
| ar.getIds().add(DatatypesFactory.eINSTANCE.createII("aaa", "bbb")); | |
| ff.setTypeCode(ActRelationshipFulfills.FLFS); | |
| ff.setTypeId(CDAFactory.eINSTANCE.createInfrastructureRootTypeId()); | |
| ff.setActReference(ar); | |
| // ff.get | |
| encounter.getInFulfillmentOf1s().add(ff); | |
| encounter.getInFulfillmentOf1s().add(CDAFactory.eINSTANCE.createInFulfillmentOf1()); | |
| encounter.getInFulfillmentOf1s().add(CDAFactory.eINSTANCE.createInFulfillmentOf1()); | |
| encounter.getInFulfillmentOf1s().add(CDAFactory.eINSTANCE.createInFulfillmentOf1()); | |
| encounter.getInFulfillmentOf1s().add(CDAFactory.eINSTANCE.createInFulfillmentOf1()); | |
| encounter.setPriorityCode(DatatypesFactory.eINSTANCE.createCE()); | |
| section.addEncounter(encounter); | |
| // saveData("foobar.xml", doc); | |
| CDAUtil.save(doc, new FileOutputStream("samples/foobar2.xml")); | |
| // ClinicalDocument clinicalDocument = loadData("foobar.xml"); | |
| ClinicalDocument clinicalDocument = CDAUtil.load(new FileInputStream("samples/foobar2.xml")); | |
| for (Section s : clinicalDocument.getSections()) { | |
| for (Entry e : s.getEntries()) { | |
| if (e.getEncounter() != null) { | |
| for (CE ce : e.getEncounter().getSDTCDischargeDispositionCodes()) { | |
| System.out.println(ce.getCode()); | |
| } | |
| } | |
| } | |
| } | |
| CDAUtil.save(clinicalDocument, new FileOutputStream("samples/foobar3.xml")); | |
| Component4 c4 = CDAFactory.eINSTANCE.createComponent4(); | |
| c4.setPriorityNumber(DatatypesFactory.eINSTANCE.createINT()); | |
| CDAUtil.saveSnippet(c4, System.out); | |
| // CDAUtil.save(clinicalDocument, System.out); | |
| // | |
| // ClinicalDocument clinicalDocument = CDAUtil.load(new FileInputStream("samples/test.xml")); | |
| // CDAUtil.save(clinicalDocument, System.out); | |
| // // | |
| // InfrastructureRootTypeId typeId = CDAFactory.eINSTANCE.createInfrastructureRootTypeId(); | |
| // typeId.setExtension("POCD_HD000040"); | |
| // doc.setTypeId(typeId); | |
| // | |
| // II id = DatatypesFactory.eINSTANCE.createII("2.16.840.1.113883.19.4", "c266"); | |
| // doc.setId(id); | |
| // | |
| // II templateId = DatatypesFactory.eINSTANCE.createII("2.16.840.1.113883.3.27.1776"); | |
| // doc.getTemplateIds().add(templateId); | |
| // | |
| // CE code = DatatypesFactory.eINSTANCE.createCE("11488-4", "2.16.840.1.113883.6.1", "LOINC", "Consultation note"); | |
| // doc.setCode(code); | |
| // | |
| // ST title = DatatypesFactory.eINSTANCE.createST("Good Health Clinic Consultation Note"); | |
| // doc.setTitle(title); | |
| // | |
| // TS effectiveTime = DatatypesFactory.eINSTANCE.createTS("20000407"); | |
| // doc.setEffectiveTime(effectiveTime); | |
| // | |
| // CE confidentialityCode = DatatypesFactory.eINSTANCE.createCE("N", "2.16.840.1.113883.5.25"); | |
| // doc.setConfidentialityCode(confidentialityCode); | |
| // | |
| // RecordTarget recordTarget = CDAFactory.eINSTANCE.createRecordTarget(); | |
| // doc.getRecordTargets().add(recordTarget); | |
| // | |
| // PatientRole patientRole = CDAFactory.eINSTANCE.createPatientRole(); | |
| // recordTarget.setPatientRole(patientRole); | |
| // | |
| // Patient patient = CDAFactory.eINSTANCE.createPatient(); | |
| // patientRole.setPatient(patient); | |
| // | |
| // PN name = DatatypesFactory.eINSTANCE.createPN(); | |
| // name.addGiven("Henry").addFamily("Levin").addSuffix("the 7th"); | |
| // patient.getNames().add(name); | |
| // | |
| // CE administrativeGenderCode = DatatypesFactory.eINSTANCE.createCE("M", "2.16.840.1.113883.5.1"); | |
| // patient.setAdministrativeGenderCode(administrativeGenderCode); | |
| // | |
| // TS birthTime = DatatypesFactory.eINSTANCE.createTS("19320924"); | |
| // patient.setBirthTime(birthTime); | |
| // | |
| // Organization providerOrganization = CDAFactory.eINSTANCE.createOrganization(); | |
| // providerOrganization.getIds().add(DatatypesFactory.eINSTANCE.createII("2.16.840.1.113883.19.5")); | |
| // patientRole.setProviderOrganization(providerOrganization); | |
| // | |
| // Author author = CDAFactory.eINSTANCE.createAuthor(); | |
| // author.setTime(DatatypesFactory.eINSTANCE.createTS("2000040714")); | |
| // doc.getAuthors().add(author); | |
| // | |
| // AssignedAuthor assignedAuthor = CDAFactory.eINSTANCE.createAssignedAuthor(); | |
| // assignedAuthor.getIds().add(DatatypesFactory.eINSTANCE.createII("2.16.840.1.113883.19.5", "KP00017")); | |
| // author.setAssignedAuthor(assignedAuthor); | |
| // | |
| // Person assignedPerson = CDAFactory.eINSTANCE.createPerson(); | |
| // assignedAuthor.setAssignedPerson(assignedPerson); | |
| // | |
| // name = DatatypesFactory.eINSTANCE.createPN(); | |
| // name.addGiven("Bob").addFamily("Dolin").addSuffix("MD"); | |
| // assignedPerson.getNames().add(name); | |
| // | |
| // Section section = CDAFactory.eINSTANCE.createSection(); | |
| // Encounter encounter = CDAFactory.eINSTANCE.createEncounter(); | |
| // | |
| // encounter.setPriorityCode(DatatypesFactory.eINSTANCE.createCE("code", "system")); | |
| // encounter.setEffectiveTime(DatatypesFactory.eINSTANCE.createIVL_TS("low", "high")); | |
| // encounter.getSDTCDischargeDispositionCodes().add(DatatypesFactory.eINSTANCE.createCE("code", "system")); | |
| // encounter.addAct(CDAFactory.eINSTANCE.createAct()); | |
| // | |
| // section.addEncounter(encounter); | |
| // doc.addSection(section); | |
| // | |
| // System.out.println("***** Constructed example *****"); | |
| // CDAUtil.save(doc, System.out); | |
| // System.out.println(); | |
| // create a validation result object to collect diagnostics produced during validation | |
| // ValidationResult result = new ValidationResult(); | |
| // ClinicalDocument clinicalDocument = CDAUtil.load(new FileInputStream("samples/ccda.xml")); | |
| // for (Section s : clinicalDocument.getSections()) { | |
| // for (Entry e : s.getEntries()) { | |
| // if (e.getEncounter() != null) { | |
| // for (CE ce : e.getEncounter().getSDTCDischargeDispositionCodes()) { | |
| // System.out.println(ce.getCode()); | |
| // } | |
| // } | |
| // } | |
| // | |
| // } | |
| // System.out.println("\n***** Reserialization of sample *****"); | |
| // System.out.println(clinicalDocument); | |
| // CDAUtil.save(clinicalDocument, System.out); | |
| // System.out.println(); | |
| // System.out.println("\n***** Sample validation results *****"); | |
| // for (Diagnostic diagnostic : result.getErrorDiagnostics()) { | |
| // System.out.println("ERROR: " + diagnostic.getMessage()); | |
| // } | |
| // for (Diagnostic diagnostic : result.getWarningDiagnostics()) { | |
| // System.out.println("WARNING: " + diagnostic.getMessage()); | |
| // } | |
| // | |
| // System.out.println( | |
| // "Number of Schema Validation Diagnostics: " + result.getSchemaValidationDiagnostics().size()); | |
| // System.out.println("Number of EMF Resource Diagnostics: " + result.getEMFResourceDiagnostics().size()); | |
| // System.out.println("Number of EMF Validation Diagnostics: " + result.getEMFValidationDiagnostics().size()); | |
| // System.out.println("Number of Total Diagnostics: " + result.getAllDiagnostics().size()); | |
| // | |
| // if (!result.hasErrors()) { | |
| // System.out.println("Document is valid"); | |
| // } else { | |
| // System.out.println("Document is invalid"); | |
| // } | |
| } | |
| } |