| /** |
| */ |
| package org.hl7.fhir; |
| |
| |
| /** |
| * <!-- begin-user-doc --> |
| * A representation of the model object '<em><b>Sequence Coordinate</b></em>'. |
| * <!-- end-user-doc --> |
| * |
| * <!-- begin-model-doc --> |
| * Variation and Sequence data. |
| * <!-- end-model-doc --> |
| * |
| * <p> |
| * The following features are supported: |
| * </p> |
| * <ul> |
| * <li>{@link org.hl7.fhir.SequenceCoordinate#getChromosome <em>Chromosome</em>}</li> |
| * <li>{@link org.hl7.fhir.SequenceCoordinate#getStart <em>Start</em>}</li> |
| * <li>{@link org.hl7.fhir.SequenceCoordinate#getEnd <em>End</em>}</li> |
| * <li>{@link org.hl7.fhir.SequenceCoordinate#getGenomeBuild <em>Genome Build</em>}</li> |
| * </ul> |
| * |
| * @see org.hl7.fhir.FhirPackage#getSequenceCoordinate() |
| * @model extendedMetaData="name='Sequence.Coordinate' kind='elementOnly'" |
| * @generated |
| */ |
| public interface SequenceCoordinate extends BackboneElement { |
| /** |
| * Returns the value of the '<em><b>Chromosome</b></em>' containment reference. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * <!-- begin-model-doc --> |
| * The chromosome containing the genetic finding. The value set will be 1-22, X, Y when the species is human without chromosome abnormality. Otherwise, NCBI-Gene code system should be used. |
| * <!-- end-model-doc --> |
| * @return the value of the '<em>Chromosome</em>' containment reference. |
| * @see #setChromosome(CodeableConcept) |
| * @see org.hl7.fhir.FhirPackage#getSequenceCoordinate_Chromosome() |
| * @model containment="true" |
| * extendedMetaData="kind='element' name='chromosome' namespace='##targetNamespace'" |
| * @generated |
| */ |
| CodeableConcept getChromosome(); |
| |
| /** |
| * Sets the value of the '{@link org.hl7.fhir.SequenceCoordinate#getChromosome <em>Chromosome</em>}' containment reference. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @param value the new value of the '<em>Chromosome</em>' containment reference. |
| * @see #getChromosome() |
| * @generated |
| */ |
| void setChromosome(CodeableConcept value); |
| |
| /** |
| * Returns the value of the '<em><b>Start</b></em>' containment reference. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * <!-- begin-model-doc --> |
| * Inclusive 0-based nucleotide position for start of genomic finding on the positive (+) genomics strand. |
| * <!-- end-model-doc --> |
| * @return the value of the '<em>Start</em>' containment reference. |
| * @see #setStart(org.hl7.fhir.Integer) |
| * @see org.hl7.fhir.FhirPackage#getSequenceCoordinate_Start() |
| * @model containment="true" |
| * extendedMetaData="kind='element' name='start' namespace='##targetNamespace'" |
| * @generated |
| */ |
| org.hl7.fhir.Integer getStart(); |
| |
| /** |
| * Sets the value of the '{@link org.hl7.fhir.SequenceCoordinate#getStart <em>Start</em>}' containment reference. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @param value the new value of the '<em>Start</em>' containment reference. |
| * @see #getStart() |
| * @generated |
| */ |
| void setStart(org.hl7.fhir.Integer value); |
| |
| /** |
| * Returns the value of the '<em><b>End</b></em>' containment reference. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * <!-- begin-model-doc --> |
| * Exclusive 0-based nucleotide position for end of genomic finding on the positive (+) genomic strand. |
| * <!-- end-model-doc --> |
| * @return the value of the '<em>End</em>' containment reference. |
| * @see #setEnd(org.hl7.fhir.Integer) |
| * @see org.hl7.fhir.FhirPackage#getSequenceCoordinate_End() |
| * @model containment="true" |
| * extendedMetaData="kind='element' name='end' namespace='##targetNamespace'" |
| * @generated |
| */ |
| org.hl7.fhir.Integer getEnd(); |
| |
| /** |
| * Sets the value of the '{@link org.hl7.fhir.SequenceCoordinate#getEnd <em>End</em>}' containment reference. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @param value the new value of the '<em>End</em>' containment reference. |
| * @see #getEnd() |
| * @generated |
| */ |
| void setEnd(org.hl7.fhir.Integer value); |
| |
| /** |
| * Returns the value of the '<em><b>Genome Build</b></em>' containment reference. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * <!-- begin-model-doc --> |
| * The Genome Build used for reference, following GRCh build versions e.g. 'GRCh 37'. Version number must be included if a versioned release of a primary build was used. |
| * <!-- end-model-doc --> |
| * @return the value of the '<em>Genome Build</em>' containment reference. |
| * @see #setGenomeBuild(CodeableConcept) |
| * @see org.hl7.fhir.FhirPackage#getSequenceCoordinate_GenomeBuild() |
| * @model containment="true" |
| * extendedMetaData="kind='element' name='genomeBuild' namespace='##targetNamespace'" |
| * @generated |
| */ |
| CodeableConcept getGenomeBuild(); |
| |
| /** |
| * Sets the value of the '{@link org.hl7.fhir.SequenceCoordinate#getGenomeBuild <em>Genome Build</em>}' containment reference. |
| * <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * @param value the new value of the '<em>Genome Build</em>' containment reference. |
| * @see #getGenomeBuild() |
| * @generated |
| */ |
| void setGenomeBuild(CodeableConcept value); |
| |
| } // SequenceCoordinate |
