| <?xml version="1.0" encoding="UTF-8"?> |
| <resource-manager-data name="rm-pbs-torque_2.3.7"> |
| <site> |
| <control-connection>ssh://abe.ncsa.uiuc.edu/usr/local/bin/qsub</control-connection> |
| </site> |
| <control> |
| <managed-files> |
| <file-staging-location>.eclipsesettings</file-staging-location> |
| <managed-file name="pbs_script" uniqueIdPrefix="true" deleteAfterUse="true"> |
| <contents>${rm:script}</contents> |
| </managed-file> |
| </managed-files> |
| <on-start-up> |
| <command-ref>find_queues</command-ref> |
| </on-start-up> |
| <submit-commands> |
| <submit-batch> |
| <command-ref>submit_script</command-ref> |
| </submit-batch> |
| </submit-commands> |
| <terminate-job> |
| <command-ref>cancel_job</command-ref> |
| </terminate-job> |
| <commands> |
| <command name="find_queues"> |
| <arglist> |
| <arg>qstat -Q -f</arg> |
| <arg>| grep Queue:</arg> |
| <arg>| cut -d ' ' -f 2</arg> |
| </arglist> |
| <parser-ref>queueParser</parser-ref> |
| </command> |
| <command name="submit_script"> |
| <arglist> |
| <arg>qsub</arg> |
| <arg>${rm:pbs_script}</arg> |
| </arglist> |
| <parser-ref>jobIdParser</parser-ref> |
| </command> |
| <command name="cancel_job"> |
| <arglist> |
| <arg>qdel</arg> |
| <arg>${rm:jobId}</arg> |
| </arglist> |
| </command> |
| </commands> |
| <parsers> |
| <stream-parser name="queueParser" stderr="false"> |
| <range>0:N</range> |
| <token> |
| <add name="available_queues"/> |
| </token> |
| </stream-parser> |
| <stream-parser name="jobIdParser" stderr="false"> |
| <range>0:N</range> |
| <token delim="[.]"> |
| <put name="jobId"> |
| <range>0</range> |
| </put> |
| </token> |
| </stream-parser> |
| </parsers> |
| <script shell="#!/bin/bash"> |
| <directive-definitions> |
| <directive-definition valueFrom="Account_Name"># @ PBS -A </directive-definition> |
| <directive-definition valueFrom="Checkpoint"># @ PBS -c </directive-definition> |
| <directive-definition valueFrom="depend"># @ PBS -W depend=</directive-definition> |
| <directive-definition valueFrom="destination"># @ PBS -q </directive-definition> |
| <directive-definition valueFrom="directive"># @ PBS -C </directive-definition> |
| <directive-definition valueFrom="Error_Path"># @ PBS -e </directive-definition> |
| <directive-definition valueFrom="export_all"># @ PBS -V </directive-definition> |
| <directive-definition valueFrom="group_list"># @ PBS -W group_list=</directive-definition> |
| <directive-definition valueFrom="Hold_Types"># @ PBS -h </directive-definition> |
| <directive-definition valueFrom="Job_Name"># @ PBS -N </directive-definition> |
| <directive-definition valueFrom="Join_Path"># @ PBS -j </directive-definition> |
| <directive-definition valueFrom="Keep_Files"># @ PBS -k </directive-definition> |
| <directive-definition valueFrom="Mail_Points"># @ PBS -m </directive-definition> |
| <directive-definition valueFrom="Mail_Users"># @ PBS -M </directive-definition> |
| <directive-definition valueFrom="Output_Path"># @ PBS -o </directive-definition> |
| <directive-definition valueFrom="Priority"># @ PBS -p </directive-definition> |
| <directive-definition valueFrom="Rerunnable"># @ PBS -r </directive-definition> |
| <directive-definition valueFrom="Resource_List.arch"># @ PBS -l arch=</directive-definition> |
| <directive-definition valueFrom="Resource_List.cput"># @ PBS -l cput=</directive-definition> |
| <directive-definition valueFrom="Resource_List.file"># @ PBS -l file=</directive-definition> |
| <directive-definition valueFrom="Resource_List.host"># @ PBS -l host=</directive-definition> |
| <directive-definition valueFrom="Resource_List.mem"># @ PBS -l mem=</directive-definition> |
| <directive-definition valueFrom="Resource_List.nice"># @ PBS -l nice=</directive-definition> |
| <directive-definition valueFrom="Resource_List.nodes"># @ PBS -l nodes=</directive-definition> |
| <directive-definition valueFrom="Resource_List.ompthreads"># @ PBS -l ompthreads=</directive-definition> |
| <directive-definition valueFrom="Resource_List.pcput"># @ PBS -l pcput=</directive-definition> |
| <directive-definition valueFrom="Resource_List.pmem"># @ PBS -l pmem=</directive-definition> |
| <directive-definition valueFrom="Resource_List.pvmem"># @ PBS -l pvmem=</directive-definition> |
| <directive-definition valueFrom="Resource_List.vmem"># @ PBS -l vmem=</directive-definition> |
| <directive-definition valueFrom="Resource_List.walltime"># @ PBS -l walltime=</directive-definition> |
| <directive-definition valueFrom="Shell_Path_List"># @ PBS -S </directive-definition> |
| <directive-definition valueFrom="stagein"># @ PBS -W stagein=</directive-definition> |
| <directive-definition valueFrom="stageout"># @ PBS -W stageout=</directive-definition> |
| <directive-definition valueFrom="User_List"># @ PBS -u </directive-definition> |
| <directive-definition valueFrom="Variable_List"># @ PBS -v </directive-definition> |
| </directive-definitions> |
| <pre-execute-commands> |
| <arglist> |
| <arg>cd</arg> |
| <arg>${rm:directory}</arg> |
| </arglist> |
| </pre-execute-commands> |
| <execute-command> |
| <arglist> |
| <arg>${rm:mpiCommand}</arg> |
| <arg>${rm:mpiArgs}</arg> |
| <arg>${rm:executablePath}</arg> |
| <arg>${rm:progArgs}</arg> |
| </arglist> |
| </execute-command> |
| <post-execute-commands> |
| <arglist> |
| <arg>touch</arg> |
| <arg>DONE</arg> |
| </arglist> |
| </post-execute-commands> |
| </script> |
| <attribute-definitions> |
| <job-attribute id="mpiCommand" name="mpiCommand" basic="true" type="choice"> |
| <description>Which mpi command to use.</description> |
| <choice>,mpiexec,mpirun</choice> |
| </job-attribute> |
| <job-attribute id="mpiCores" name="mpiCores" min="1" basic="true" type="integer"> |
| <description>the '-np' value</description> |
| </job-attribute> |
| <job-attribute id="mpiArgs" name="mpiArgs" basic="true" type="string"> |
| <description>Which mpi options to use.</description> |
| <default>-machinefile $PBS_NODEFILE -np ${rm:mpiCores}</default> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Account_Name" name="Account_Name" basic="true" type="string"> |
| <description>Account to which to charge this job.</description> |
| <tooltip>Format: string</tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Checkpoint" name="Checkpoint" type="choice"> |
| <description>Determines when checkpointing (if supported) will be performed by PBS on behalf of the job.</description> |
| <tooltip>Format: the strings "n" (no checkpointing), "s" (to be performed only when the server executing the job is shutdown), "c"s |
| (to be performed at the default minimum time for thes servers executing the job), "c=mmmm" (to be performed at an intervals ofs |
| minutess whichs is the integer number of minutes of CPUs time used bys the job; values must be greater than zero); defaults value: |
| "u", whichs iss unspecified. |
| </tooltip> |
| <choice>,u,n,s,c,c=????</choice> |
| <default>u</default> |
| </job-attribute> |
| <job-attribute id="PBSJOB_depend" name="depend" type="string"> |
| <description>The type of inter-job dependencies specified by the job owner.</description> |
| <tooltip>Format: "type:jobid[,jobid...]"; default value: no dependencies.</tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_destination" name="destination" type="string" basic="true"> |
| <description>Designation of the queue to which to submit the job.</description> |
| <tooltip>Format: queue[@server].</tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_directive" name="directive" type="string"> |
| <description>Defines the prefix that declares a directive to the qsub command within the script file.</description> |
| <tooltip>See the paragraph on script directives in the Extended Description section. If the option is presented with a |
| directive_prefix argument that is the null string, qsub will not scan the script file for directives. |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Error_Path" name="Error_Path" type="string"> |
| <description>The final path name for the file containing the job's standard error stream.</description> |
| <tooltip>Format: "[hostname:]pathname". If the option is not specified, the default file name for the standard error stream will be |
| used. The default name has the following form: job_name.eSeq_num where job_name is the name of the job, see -N option, and Seq_num |
| is the job number assigned when the job is submitted; default value: (job_name).e(job_number). |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_export_all" name="export_all" basic="true" type="boolean"> |
| <description>Declares that all environment variables in the qsub command's environment are to be exported to the batch job.</description> |
| <default>true</default> |
| </job-attribute> |
| <job-attribute id="PBSJOB_group_list" name="group_list" type="string"> |
| <description>A list of group_names@hosts which determines the group under which the job is run on a given host.</description> |
| <tooltip>Format: group_name[@host][,group_name[@host]...]. When a job is to be placed into execution, the server will select a |
| group |
| name according to the following ordered set of rules: 1) Select the group name from the list for which the associated host |
| name |
| matches the name of the execution host; 2) Select the group name which has no associated host name, the wildcard name; 3) Use |
| the |
| login group for the username under which the job will be run. |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Hold_Types" name="Hold_Types" type="choice"> |
| <description>The set of holds currently applied to the job.</description> |
| <tooltip>If the set is not null, the job will not be scheduled for execution and is said to be in the hold state. Note, the hold |
| state takes precedence over the wait state. Format: string made up of the letters 'u', 's', 'o'; default value: no hold. |
| </tooltip> |
| <choice>,u,s,o</choice> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Job_Name" name="Job_Name" type="string" basic="true"> |
| <description>The name assigned to the job by the qsub or qalter command.</description> |
| <tooltip>Format: string up to 15 characters, first character must be alphabetic; default value: the base name of the job script or |
| STDIN. |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Join_Path" name="Join_Path" type="boolean"> |
| <description>Merge stdout and stderr into stdout.</description> |
| <tooltip>Format: boolean, values accepted are "True", "TRUE", "true", "Y", "y", "1", "False", "FALSE", "false", "N", "n", "0"; |
| default value: false. |
| </tooltip> |
| <default>false</default> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Keep_Files" name="Keep_Files" type="choice"> |
| <description>Retain these streams on the execution host upon job termination.</description> |
| <tooltip>Format: "o", "e", "oe" or "eo"; default value: no keep, return files to submission host.</tooltip> |
| <choice>,o,e,oe,eo</choice> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Mail_Points" name="Mail_Points" type="choice"> |
| <description>Identifies at which state changes the server will send mail about the job.</description> |
| <tooltip>Format: string made up of the letters 'a' for abort, 'b' for beginning, and default value: 'a', send on job abort. |
| </tooltip> |
| <choice>,a,b</choice> |
| <default>a</default> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Mail_Users" name="Mail_Users" type="string"> |
| <description>The set of users to whom mail may be sent when the job makes certain state changes.</description> |
| <tooltip>Format: "user@host[,user@host]"; default value: job owner only.</tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Output_Path" name="Output_Path" type="string"> |
| <description>The final path name for the file containing the job's standard output stream.</description> |
| <tooltip>Format: "[hostname:]pathname". If the option is not specified, the default file name for the standard error stream will be |
| used. The default name has the following form: job_name.oSeq_num where job_name is the name of the job, see -N option, and Seq_num |
| is the job number assigned when the job is submitted; default value: (job_name).o(job_number). |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Priority" name="Priority" type="string"> |
| <description>The job scheduling priority assigned by the user.</description> |
| <tooltip>Format: "[+|-]nnnnn"; default value: undefined.</tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Rerunnable" name="Rerunnable" type="choice"> |
| <description>The rerunnable flag assigned by the user.</description> |
| <tooltip>Format: "y" or "n", see Join_Path; default value: y, job is rerunable.</tooltip> |
| <choice>,n,y</choice> |
| <default>y</default> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.arch" name="Resource_List.arch" type="string"> |
| <description>Specifies the administrator defined system architecture requried.</description> |
| <tooltip>This defaults to whatever the PBS_MACH string is set to in "local.mk". Units: string.</tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.cput" name="Resource_List.cput" type="string"> |
| <description>Maximum amount of CPU time used by all processes in the job.</description> |
| <tooltip>Format: [[hours:]minutes:]seconds[.milliseconds].</tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.file" name="Resource_List.file" type="string"> |
| <description>The largest size of any single file that may be created by the job.</description> |
| <tooltip>Format: integer[suffix]; the suffix is a multiplier in bytes or words (word size of the host): b (bytes), w (words), kb/kw |
| (kilo), mb/mw (mega), gb/bw (giga). |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.host" name="Resource_List.host" type="string"> |
| <description>Name of host on which job should be run.</description> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.mem" name="Resource_List.mem" type="string"> |
| <description>Maximum amount of memory used by all concurrent processes in the job.</description> |
| <tooltip>Format: integer[suffix]; the suffix is a multiplier in bytes or words (word size of the host): b (bytes), w (words), kb/kw |
| (kilo), mb/mw (mega), gb/bw (giga). |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.nice" name="Resource_List.nice" type="integer" min="0" max="10"> |
| <description>The nice value under which the job is to be run.</description> |
| <tooltip>0 to 10.</tooltip> |
| <default>0</default> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.nodes" name="Resource_List.nodes" basic="true" type="string"> |
| <description>Number and/or type of nodes to be reserved for exclusive use by the job.</description> |
| <tooltip>The value is one or more node_specs joined with the '+' character, "node_spec[+node_spec...]. Each node_spec is a number |
| of |
| nodes required of the type declared in the node_spec and a name or one or more properity or properities desired for the nodes. |
| The |
| number, the name, and each properity in the node_spec are separated by a colon ':'. If no number is specified, one (1) is |
| assumed. |
| Units: string. The name of a node is its hostname. The properties of nodes are: ppn=# requested; defaults to 1; or an |
| arbitrary |
| string defined by system administrator. Example: To ask for 2 processors on each of two blue nodes and three processors |
| on one red |
| node: -l nodes=2:blue:ppn=2+red:ppn=3. |
| </tooltip> |
| <default>1</default> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.ompthreads" name="Resource_List.ompthreads" type="integer" min="1"> |
| <description>Number of threads per processor for Open MP jobs.</description> |
| <default>1</default> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.pcput" name="Resource_List.pcput" type="string"> |
| <description>Maximum amount of CPU time used by any single process in the job.</description> |
| <tooltip>Format: [[hours:]minutes:]seconds[.milliseconds].</tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.pmem" name="Resource_List.pmem" type="string"> |
| <description>Maximum amount of physical memory (workingset) used by any single process of the job.</description> |
| <tooltip>Format: integer[suffix]; the suffix is a multiplier in bytes or words (word size of the host): b (bytes), w (words), kb/kw |
| (kilo), mb/mw (mega), gb/bw (giga). |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.pvmem" name="Resource_List.pvmem" type="string"> |
| <description>Maximum amount of virtual memory used by any single process in the job.</description> |
| <tooltip>Format: integer[suffix]; the suffix is a multiplier in bytes or words (word size of the host): b (bytes), w (words), kb/kw |
| (kilo), mb/mw (mega), gb/bw (giga). |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.vmem" name="Resource_List.vmem" type="string"> |
| <description>Maximum amount of virtual memory used by all concurrent processes in the job.</description> |
| <tooltip>Format: integer[suffix]; the suffix is a multiplier in bytes or words (word size of the host): b (bytes), w (words), kb/kw |
| (kilo), mb/mw (mega), gb/bw (giga). |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Resource_List.walltime" name="Resource_List.walltime" basic="true" type="string"> |
| <description>Maximum amount of real time during which the job can be in the running state.</description> |
| <tooltip>Format: [[hours:]minutes:]seconds[.milliseconds].</tooltip> |
| <default>00:30:00</default> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Shell_Path_List" name="Shell_Path_List" type="string"> |
| <description>A set of absolute paths of the program to process the job's script file.</description> |
| <tooltip>Format: path[@host][,path[@host]...]. If this is null, then the user's login shell on the host of execution will be used. |
| Default value: null, login shell. |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_stagein" name="stagein" type="string"> |
| <description>The list of files to be staged in prior to job execution.</description> |
| <tooltip>Format: local_path@remote_host:remote_path.</tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_stageout" name="stageout" type="string"> |
| <description>The list of files to be staged out after job execution.</description> |
| <tooltip>Format: local_path@remote_host:remote_path.</tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_User_List" name="User_List" type="string"> |
| <description>The list of user@hosts which determines the user name under which the job is run on a given host.</description> |
| <tooltip>When a job is to be placed into execution, the server will select a user name from the list according to the following |
| ordered set of rules: 1) Select the user name from the list for which the associated host name matches the name of the execution |
| host; 2) Select the user name which has no associated host name, the wild card name; 3) Use the Job_Owner as the user name. |
| Default |
| value: job owner name. |
| </tooltip> |
| </job-attribute> |
| <job-attribute id="PBSJOB_Variable_List" name="Variable_List" type="string"> |
| <description>This is the list of environment variables passed with the Queue Job batch request.</description> |
| </job-attribute> |
| </attribute-definitions> |
| <launch-tab advancedModeEnabled="true"> |
| <tab-controller> |
| <title>Standard</title> |
| <group> |
| <grid-layout numColumns="2"/> |
| <title>Script Configuration</title> |
| <widget type="selectAttributes"> |
| <tooltip>Choose the attributes to display in the Detailed Tab.</tooltip> |
| </widget> |
| <widget type="showScript" readOnly="true"> |
| <tooltip>Show the batch script as it would currently be submitted.</tooltip> |
| </widget> |
| </group> |
| <tab-folder> |
| <title>Job Settings</title> |
| <tab-item> |
| <title>Basic</title> |
| <group> |
| <grid-layout numColumns="3"/> |
| <!-- row 1 --> |
| <widget type="text"> |
| <label>Job Name: </label> |
| <tooltip>${rm:Job_Name#tooltip}</tooltip> |
| <content> |
| <arglist> |
| <arg>${rm:Job_Name#value}</arg> |
| </arglist> |
| </content> |
| <saveValueTo>Job_Name</saveValueTo> |
| </widget> |
| <widget type="label"> |
| <content> |
| <arglist> |
| <arg>${rm:Job_Name#description}</arg> |
| </arglist> |
| </content> |
| </widget> |
| <!-- row 2 --> |
| <widget type="combo" readOnly="true"> |
| <label>Queue: </label> |
| <tooltip>${rm:destination#tooltip}</tooltip> |
| <content> |
| <arglist> |
| <arg>${rm:available_queues}</arg> |
| </arglist> |
| </content> |
| <saveValueTo>destination</saveValueTo> |
| </widget> |
| <widget type="label"> |
| <content> |
| <arglist> |
| <arg>${rm:destination#description}</arg> |
| </arglist> |
| </content> |
| </widget> |
| <!-- row 3 --> |
| <widget type="text"> |
| <label>Nodes: </label> |
| <tooltip>${rm:Resource_List.nodes#tooltip}</tooltip> |
| <content> |
| <arglist> |
| <arg>${rm:Resource_List.nodes#value}</arg> |
| </arglist> |
| </content> |
| <saveValueTo>Resource_List.nodes</saveValueTo> |
| </widget> |
| <widget type="label"> |
| <content> |
| <arglist> |
| <arg>${rm:Resource_List.nodes#description}</arg> |
| </arglist> |
| </content> |
| </widget> |
| <!-- row 4 --> |
| <widget type="text"> |
| <label>Wallclock Time</label> |
| <tooltip>${rm:Resource_List.walltime#tooltip}</tooltip> |
| <content> |
| <arglist> |
| <arg>${rm:Resource_List.walltime#value}</arg> |
| </arglist> |
| </content> |
| <saveValueTo>Resource_List.walltime</saveValueTo> |
| </widget> |
| <widget type="label"> |
| <content> |
| <arglist> |
| <arg>${rm:Resource_List.walltime#description}</arg> |
| </arglist> |
| </content> |
| </widget> |
| <!-- row 5 --> |
| <widget type="combo" readOnly="true"> |
| <label>MPI Command: </label> |
| <content> |
| <arglist> |
| <arg>mpiCommand</arg> |
| </arglist> |
| </content> |
| </widget> |
| <widget type="label"> |
| <content> |
| <arglist> |
| <arg>MPI executable to use</arg> |
| </arglist> |
| </content> |
| </widget> |
| <!-- row 6 --> |
| <widget type="spinner" readOnly="true"> |
| <label>MPI Number of Cores: </label> |
| <content> |
| <arglist> |
| <arg>mpiCores</arg> |
| </arglist> |
| </content> |
| </widget> |
| <widget type="label"> |
| <content> |
| <arglist> |
| <arg>The number following "-np" on the command line</arg> |
| </arglist> |
| </content> |
| </widget> |
| </group> |
| </tab-item> |
| <tab-item> |
| <title>Detailed</title> |
| <group dynamic="true" scrollable="true"> |
| <grid-layout numColumns="3"/> |
| <!-- iterates through all registered attributes, one to a row --> |
| <all-attributes> |
| <include sort="true" headers="true" name="true" tooltip="true" description="true"/> |
| </all-attributes> |
| </group> |
| </tab-item> |
| </tab-folder> |
| </tab-controller> |
| </launch-tab> |
| </control> |
| <monitor> |
| </monitor> |
| </resource-manager-data> |
