org.eclipse.stem.diseasemodels/model/diseasemodels.genmodel

<?xml version="1.0" encoding="UTF-8"?>
<genmodel:GenModel xmi:version="2.0"
    xmlns:xmi="http://www.omg.org/XMI" xmlns:ecore="http://www.eclipse.org/emf/2002/Ecore"
    xmlns:genmodel="http://www.eclipse.org/emf/2002/GenModel" modelDirectory="/org.eclipse.stem.diseasemodels/src"
    editDirectory="/org.eclipse.stem.diseasemodels/src" editorDirectory="/org.eclipse.stem.ui.diseasemodels/src"
    modelPluginID="org.eclipse.stem.diseasemodels" modelName="Diseasemodels" nonNLSMarkers="true"
    richClientPlatform="true" testsDirectory="/org.eclipse.stem.tests.diseasemodels/src"
    importerID="org.eclipse.emf.importer.java" complianceLevel="5.0" copyrightFields="false"
    usedGenPackages="../../org.eclipse.stem.core/model/core.genmodel#//model ../../org.eclipse.stem.core/model/core.genmodel#//common ../../org.eclipse.stem.core/model/core.genmodel#//graph ../../org.eclipse.stem.core/model/core.genmodel#//modifier platform:/plugin/org.eclipse.emf.ecore/model/Ecore.genmodel#//ecore ../../org.eclipse.stem.core/model/core.genmodel#//scenario ../../org.eclipse.stem.core/model/core.genmodel#//sequencer ../../org.eclipse.stem.definitions/model/definitions.genmodel#//labels ../../org.eclipse.stem.core/model/core.genmodel#//solver ../../org.eclipse.stem.populationmodels/model/standard.genmodel#//standard">
  <foreignModel>@model</foreignModel>
  <genPackages prefix="Standard" basePackage="org.eclipse.stem.diseasemodels" disposableProviderFactory="true"
      generateExampleClass="false" ecorePackage="standard.ecore#/">
    <genDataTypes ecoreDataType="standard.ecore#//URI"/>
    <genDataTypes ecoreDataType="standard.ecore#//EList"/>
    <genDataTypes ecoreDataType="standard.ecore#//Random"/>
    <genClasses image="false" ecoreClass="standard.ecore#//DeterministicSEIRDiseaseModel"/>
    <genClasses image="false" ecoreClass="standard.ecore#//DeterministicSIDiseaseModel"/>
    <genClasses image="false" ecoreClass="standard.ecore#//DeterministicSIRDiseaseModel"/>
    <genClasses image="false" ecoreClass="standard.ecore#//DiseaseModel">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//DiseaseModel/backgroundMortalityRate"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//DiseaseModel/populationIdentifier"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//DiseaseModel/timePeriod"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//DiseaseModel/diseaseName"/>
      <genFeatures property="None" createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//DiseaseModel/relativeTolerance"/>
      <genFeatures property="None" createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//DiseaseModel/finiteDifference"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//DiseaseModel/frequencyDependent"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//DiseaseModel/backgroundBirthRate"/>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModel/getAdjustedBackgroundMortalityRate">
        <genParameters ecoreParameter="standard.ecore#//DiseaseModel/getAdjustedBackgroundMortalityRate/timeDelta"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModel/createDiseaseModelLabel"/>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModel/createDiseaseModelLabelValue"/>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModel/createDiseaseModelState"/>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModel/initializeDiseaseState">
        <genParameters ecoreParameter="standard.ecore#//DiseaseModel/initializeDiseaseState/diseaseModelState"/>
        <genParameters ecoreParameter="standard.ecore#//DiseaseModel/initializeDiseaseState/diseaseModelLabel"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModel/initializeDiseaseState.1">
        <genParameters ecoreParameter="standard.ecore#//DiseaseModel/initializeDiseaseState.1/diseaseModelLabel"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModel/createInfector"/>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModel/getAdjustedBackgroundBirthRate">
        <genParameters ecoreParameter="standard.ecore#//DiseaseModel/getAdjustedBackgroundBirthRate/timeDelta"/>
      </genOperations>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//DiseaseModelLabel">
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//DiseaseModelLabel/populationLabel"/>
      <genFeatures property="None" children="true" createChild="true" ecoreFeature="ecore:EReference standard.ecore#//DiseaseModelLabel/diseaseModelState"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//DiseaseModelLabel/populationModelLabel"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//DiseaseModelLabelValue">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//DiseaseModelLabelValue/diseaseDeaths"/>
      <genFeatures property="Readonly" createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//DiseaseModelLabelValue/populationCount"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//DiseaseModelLabelValue/incidence"/>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModelLabelValue/set">
        <genParameters ecoreParameter="standard.ecore#//DiseaseModelLabelValue/set/value"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModelLabelValue/add">
        <genParameters ecoreParameter="standard.ecore#//DiseaseModelLabelValue/add/value"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModelLabelValue/sub">
        <genParameters ecoreParameter="standard.ecore#//DiseaseModelLabelValue/sub/value"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModelLabelValue/scale">
        <genParameters ecoreParameter="standard.ecore#//DiseaseModelLabelValue/scale/scaleFactor"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModelLabelValue/zeroOutPopulationCount"/>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModelLabelValue/getAdditions"/>
      <genOperations ecoreOperation="standard.ecore#//DiseaseModelLabelValue/getSubstractions"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//DiseaseModelState">
      <genFeatures property="None" notify="false" createChild="false" ecoreFeature="ecore:EReference standard.ecore#//DiseaseModelState/label"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//Infector">
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//Infector/diseaseModel"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//Infector/targetURI"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//Infector/diseaseName"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//Infector/targetISOKey"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//Infector/labelsToInfect"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//Infector/populationIdentifier"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//SEIR">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SEIR/incubationRate"/>
      <genOperations ecoreOperation="standard.ecore#//SEIR/getAdjustedIncubationRate">
        <genParameters ecoreParameter="standard.ecore#//SEIR/getAdjustedIncubationRate/timeDelta"/>
      </genOperations>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//SEIRLabel">
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SEIRLabel/deltaValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SEIRLabel/probeValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SEIRLabel/tempValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SEIRLabel/originalValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SEIRLabel/errorScale"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//SEIRLabelValue">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SEIRLabelValue/e"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//SI">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SI/transmissionRate"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SI/nonLinearityCoefficient"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SI/recoveryRate"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SI/infectiousMortalityRate"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SI/physicallyAdjacentInfectiousProportion"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SI/roadNetworkInfectiousProportion"/>
      <genFeatures property="None" createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SI/infectiousMortality"/>
      <genOperations ecoreOperation="standard.ecore#//SI/getAdjustedInfectiousMortalityRate">
        <genParameters ecoreParameter="standard.ecore#//SI/getAdjustedInfectiousMortalityRate/timeDelta"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//SI/getAdjustedTransmissionRate">
        <genParameters ecoreParameter="standard.ecore#//SI/getAdjustedTransmissionRate/timeDelta"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//SI/getAdjustedRecoveryRate">
        <genParameters ecoreParameter="standard.ecore#//SI/getAdjustedRecoveryRate/timeDelta"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//SI/getEffectiveInfectious">
        <genParameters ecoreParameter="standard.ecore#//SI/getEffectiveInfectious/node"/>
        <genParameters ecoreParameter="standard.ecore#//SI/getEffectiveInfectious/diseaseLabel"/>
        <genParameters ecoreParameter="standard.ecore#//SI/getEffectiveInfectious/onsiteInfectious"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//SI/getNormalizedEffectiveInfectious">
        <genParameters ecoreParameter="standard.ecore#//SI/getNormalizedEffectiveInfectious/node"/>
        <genParameters ecoreParameter="standard.ecore#//SI/getNormalizedEffectiveInfectious/diseaseLabel"/>
        <genParameters ecoreParameter="standard.ecore#//SI/getNormalizedEffectiveInfectious/onsiteInfectious"/>
      </genOperations>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//SIDiseaseModelState"/>
    <genClasses image="false" ecoreClass="standard.ecore#//SIInfector">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SIInfector/infectiousCount"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//SILabel">
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SILabel/deltaValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SILabel/probeValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SILabel/tempValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SILabel/originalValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SILabel/errorScale"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//SILabelValue">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SILabelValue/i"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//SIR">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SIR/immunityLossRate"/>
      <genOperations ecoreOperation="standard.ecore#//SIR/getAdjustedImmunityLossRate">
        <genParameters ecoreParameter="standard.ecore#//SIR/getAdjustedImmunityLossRate/timeDelta"/>
      </genOperations>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//SIRLabel">
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SIRLabel/deltaValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SIRLabel/probeValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SIRLabel/tempValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SIRLabel/originalValue"/>
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//SIRLabel/errorScale"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//SIRLabelValue">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SIRLabelValue/r"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//StandardDiseaseModel">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//StandardDiseaseModel/totalPopulationCount"/>
      <genFeatures property="Readonly" createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//StandardDiseaseModel/totalPopulationCountReciprocal"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//StandardDiseaseModel/totalArea"/>
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//StandardDiseaseModel/referencePopulationDensity"/>
      <genOperations ecoreOperation="standard.ecore#//StandardDiseaseModel/addToTotalPopulationCount">
        <genParameters ecoreParameter="standard.ecore#//StandardDiseaseModel/addToTotalPopulationCount/populationCount"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//StandardDiseaseModel/computeTotalPopulationCountReciprocal"/>
      <genOperations ecoreOperation="standard.ecore#//StandardDiseaseModel/addToTotalArea">
        <genParameters ecoreParameter="standard.ecore#//StandardDiseaseModel/addToTotalArea/area"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//StandardDiseaseModel/calculateDelta">
        <genParameters ecoreParameter="standard.ecore#//StandardDiseaseModel/calculateDelta/time"/>
        <genParameters ecoreParameter="standard.ecore#//StandardDiseaseModel/calculateDelta/timeDelta"/>
        <genParameters ecoreParameter="standard.ecore#//StandardDiseaseModel/calculateDelta/labels"/>
      </genOperations>
      <genOperations ecoreOperation="standard.ecore#//StandardDiseaseModel/doModelSpecificAdjustments">
        <genParameters ecoreParameter="standard.ecore#//StandardDiseaseModel/doModelSpecificAdjustments/label"/>
      </genOperations>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//StandardDiseaseModelLabel"/>
    <genClasses image="false" ecoreClass="standard.ecore#//StandardDiseaseModelLabelValue">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//StandardDiseaseModelLabelValue/s"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//StandardDiseaseModelState">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//StandardDiseaseModelState/areaRatio"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//StandardInfector"/>
    <genClasses image="false" ecoreClass="standard.ecore#//StochasticSEIRDiseaseModel"/>
    <genClasses image="false" ecoreClass="standard.ecore#//StochasticSIDiseaseModel"/>
    <genClasses image="false" ecoreClass="standard.ecore#//StochasticSIRDiseaseModel"/>
    <genClasses image="false" ecoreClass="standard.ecore#//SanityChecker"/>
    <genClasses image="false" ecoreClass="standard.ecore#//IntegrationLabel"/>
    <genClasses image="false" ecoreClass="standard.ecore#//IntegrationLabelValue"/>
    <genClasses image="false" ecoreClass="standard.ecore#//IntegrationDecorator">
      <genOperations ecoreOperation="standard.ecore#//IntegrationDecorator/isDeterministic"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//AggregatingSIDiseaseModel"/>
    <genClasses image="false" ecoreClass="standard.ecore#//AggregatingDiseaseModelState">
      <genFeatures notify="false" createChild="false" propertySortChoices="true" ecoreFeature="ecore:EReference standard.ecore#//AggregatingDiseaseModelState/childrensLabels"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//AggregatingSEIRDiseaseModel"/>
    <genClasses image="false" ecoreClass="standard.ecore#//AggregatingSIRDiseaseModel"/>
    <genClasses image="false" ecoreClass="standard.ecore#//StochasticDiseaseModel">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//StochasticDiseaseModel/seed"/>
      <genFeatures property="Readonly" createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//StochasticDiseaseModel/randomGenerator"/>
    </genClasses>
    <genClasses image="false" ecoreClass="standard.ecore#//StandardStochasticDiseaseModel">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//StandardStochasticDiseaseModel/gain"/>
      <genOperations ecoreOperation="standard.ecore#//StandardStochasticDiseaseModel/computeNoise"/>
    </genClasses>
    <genClasses ecoreClass="standard.ecore#//SIRInoculator">
      <genFeatures createChild="false" ecoreFeature="ecore:EAttribute standard.ecore#//SIRInoculator/inoculatedPercentage"/>
    </genClasses>
    <genClasses ecoreClass="standard.ecore#//StochasticPoissonSIDiseaseModel"/>
    <genClasses ecoreClass="standard.ecore#//StochasticPoissonSIRDiseaseModel"/>
    <genClasses ecoreClass="standard.ecore#//StochasticPoissonSEIRDiseaseModel"/>
  </genPackages>
</genmodel:GenModel>