| package org.eclipse.stem.diseasemodels.poliodiseasemodel.impl; |
| |
| import org.eclipse.emf.common.notify.Notification; |
| import org.eclipse.emf.ecore.EClass; |
| import org.eclipse.emf.ecore.impl.ENotificationImpl; |
| import org.eclipse.stem.core.graph.Node; |
| import org.eclipse.stem.core.model.STEMTime; |
| import org.eclipse.stem.diseasemodels.poliodiseasemodel.OpvLabelValue; |
| import org.eclipse.stem.diseasemodels.poliodiseasemodel.OralPolioVaccineModel; |
| import org.eclipse.stem.diseasemodels.poliodiseasemodel.PolioFactory; |
| import org.eclipse.stem.diseasemodels.poliodiseasemodel.PolioPackage; |
| import org.eclipse.stem.diseasemodels.standard.DiseaseModelLabel; |
| import org.eclipse.stem.diseasemodels.standard.DiseaseModelLabelValue; |
| import org.eclipse.stem.diseasemodels.standard.StandardDiseaseModelLabel; |
| import org.eclipse.stem.diseasemodels.standard.StandardDiseaseModelLabelValue; |
| import org.eclipse.stem.diseasemodels.standard.impl.DeterministicSEIRDiseaseModelImpl; |
| import org.eclipse.stem.interventions.StandardInterventionLabel; |
| import org.eclipse.stem.interventions.StandardInterventionLabelValue; |
| |
| /** |
| * <!-- begin-user-doc --> An implementation of the model object ' |
| * <em><b>Oral Polio Vaccine Model</b></em>'. <!-- end-user-doc --> |
| * <p> |
| * The following features are implemented: |
| * <ul> |
| * <li> |
| * {@link org.eclipse.stem.diseasemodels.poliodiseasemodel.impl.OralPolioVaccineModelImpl#getEfficacyVaccine |
| * <em>Efficacy Vaccine</em>}</li> |
| * <li> |
| * {@link org.eclipse.stem.diseasemodels.poliodiseasemodel.impl.OralPolioVaccineModelImpl#getReversionRate |
| * <em>Reversion Rate</em>}</li> |
| * <li> |
| * {@link org.eclipse.stem.diseasemodels.poliodiseasemodel.impl.OralPolioVaccineModelImpl#getPartialSusceptibilityVaccine |
| * <em>Partial Susceptibility Vaccine</em>}</li> |
| * <li> |
| * {@link org.eclipse.stem.diseasemodels.poliodiseasemodel.impl.OralPolioVaccineModelImpl#getTransRateVaccine |
| * <em>Trans Rate Vaccine</em>}</li> |
| * <li> |
| * {@link org.eclipse.stem.diseasemodels.poliodiseasemodel.impl.OralPolioVaccineModelImpl#getIncubRateVaccine |
| * <em>Incub Rate Vaccine</em>}</li> |
| * <li> |
| * {@link org.eclipse.stem.diseasemodels.poliodiseasemodel.impl.OralPolioVaccineModelImpl#getInfectRecoveryRateVaccine |
| * <em>Infect Recovery Rate Vaccine</em>}</li> |
| * <li> |
| * {@link org.eclipse.stem.diseasemodels.poliodiseasemodel.impl.OralPolioVaccineModelImpl#getParalyticFractionVaccine |
| * <em>Paralytic Fraction Vaccine</em>}</li> |
| * <li> |
| * {@link org.eclipse.stem.diseasemodels.poliodiseasemodel.impl.OralPolioVaccineModelImpl#getParalyticFractionWild |
| * <em>Paralytic Fraction Wild</em>}</li> |
| * </ul> |
| * </p> |
| * |
| * @generated |
| */ |
| public class OralPolioVaccineModelImpl extends |
| DeterministicSEIRDiseaseModelImpl implements OralPolioVaccineModel { |
| |
| /** |
| * The default value of the '{@link #getEfficacyVaccine() |
| * <em>Efficacy Vaccine</em>}' attribute. <!-- begin-user-doc --> <!-- |
| * end-user-doc --> |
| * |
| * @see #getEfficacyVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected static final double EFFICACY_VACCINE_EDEFAULT = 1.0; |
| |
| /** |
| * The cached value of the '{@link #getEfficacyVaccine() |
| * <em>Efficacy Vaccine</em>}' attribute. <!-- begin-user-doc --> <!-- |
| * end-user-doc --> |
| * |
| * @see #getEfficacyVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected double efficacyVaccine = EFFICACY_VACCINE_EDEFAULT; |
| |
| /** |
| * To create a user defined (experimental) disease mode, the user may wish |
| * to extend the existing models but simply override two methods. |
| * computeDiseaseDeltas() sets the work flow for the model. The following |
| * example is derived from the standard code for all build in models but in |
| * the line below where we define final "double transmisionRate" we show and |
| * example modification where a periodic forcing factor { sin(freq*t) } is |
| * added to the code as an example modification. |
| * |
| * @param time |
| * current time |
| * @param currentState |
| * the current state of the population |
| * @param diseaseLabel |
| * the disease label for which the state transitions are being |
| * computed. |
| * @param timeDelta |
| * the time period (milliseconds) over which the population |
| * members transition to new states |
| * @return a disease state label value that contains the number of delta |
| * changes in each disease state |
| * |
| * Users can modify the method below to create their own model. |
| * |
| * @see org.eclipse.stem.diseasemodels.standard.impl.SIImpl#computeDiseaseDeltas(StandardDiseaseModelLabelValue, |
| * StandardDiseaseModelLabel, long) |
| * @generated NOT |
| */ |
| @Override |
| public StandardDiseaseModelLabelValue computeDiseaseDeltas( |
| final STEMTime time, double t, |
| final StandardDiseaseModelLabelValue currentState, |
| final StandardDiseaseModelLabel diseaseLabel, final long timeDelta, |
| DiseaseModelLabelValue returnValue) { |
| |
| OpvLabelValue currentOPVstate = (OpvLabelValue) currentState; |
| OpvLabelValue ret = (OpvLabelValue) returnValue; |
| |
| // code goes here |
| double popCount = currentOPVstate.getPopulationCount(); |
| // adjust parameter value |
| double adjustEfficacyVaccine = getEfficacyVaccine() |
| * (double) timeDelta / (double) getTimePeriod(); |
| double adjustReversionRate = getReversionRate() * (double) timeDelta |
| / (double) getTimePeriod(); |
| double adjustPatialSusceptibilityVaccine = getPartialSusceptibilityVaccine() |
| * (double) timeDelta / (double) getTimePeriod(); |
| double adjustTransRateVaccine = getTransRateVaccine() |
| * (double) timeDelta / (double) getTimePeriod(); |
| double adjustIncubRateVaccine = getIncubRateVaccine() |
| * (double) timeDelta / (double) getTimePeriod(); |
| double adjustRecoverRateVaccine = getInfectRecoveryRateVaccine() |
| * (double) timeDelta / (double) getTimePeriod(); |
| double adjustParalyticFrationVaccine = getParalyticFractionVaccine() |
| * (double) timeDelta / (double) getTimePeriod(); |
| double adjustParalyticFractionWild = getParalyticFractionWild() |
| * (double) timeDelta / (double) getTimePeriod(); |
| |
| double adjustTransRateWild = getTransmissionRate() * (double) timeDelta |
| / (double) getTimePeriod(); |
| double adjustIncubRateWild = 1 / (getIncubationRate() |
| * (double) timeDelta / (double) getTimePeriod()); |
| double adjustRecoverRateWild = getRecoveryRate() * (double) timeDelta |
| / (double) getTimePeriod(); |
| |
| double adjustinfectiousMortalityRate = getInfectiousMortalityRate() |
| * (double) timeDelta / (double) getTimePeriod(); |
| |
| // rate 1 |
| double SVtoEV = (1 - adjustReversionRate) * adjustTransRateVaccine |
| * adjustPatialSusceptibilityVaccine * currentOPVstate.getSv() |
| * currentOPVstate.getV() / popCount; |
| // rate 2 |
| double SVtoEW = adjustTransRateWild * currentOPVstate.getI() |
| * adjustPatialSusceptibilityVaccine * currentOPVstate.getSv() |
| / popCount + adjustReversionRate * adjustTransRateVaccine |
| * adjustPatialSusceptibilityVaccine * currentOPVstate.getSv() |
| * currentOPVstate.getV() / popCount; |
| // rate 3 |
| double S0toEV = (1 - adjustReversionRate) * adjustTransRateVaccine |
| * currentOPVstate.getS() * currentOPVstate.getV() / popCount; |
| |
| // rate 4 |
| double S0toEW = adjustTransRateWild * currentOPVstate.getI() |
| * currentOPVstate.getS() / popCount + adjustReversionRate |
| * adjustTransRateVaccine * currentOPVstate.getS() |
| * currentOPVstate.getV() / popCount; |
| // rate 5 |
| double EVtoV = adjustIncubRateVaccine * currentOPVstate.getEv() |
| / popCount; |
| // rate 6 |
| double EWtoIW = adjustIncubRateWild * currentOPVstate.getE() / popCount; |
| // rate 7 |
| double VtoSV = (1 - adjustEfficacyVaccine) * adjustRecoverRateVaccine |
| * currentOPVstate.getV() / popCount; |
| // rate 8 |
| double VtoPV = adjustParalyticFrationVaccine * adjustEfficacyVaccine |
| * adjustRecoverRateVaccine * currentOPVstate.getV() / popCount; |
| // rate 9 |
| double VtoR = (1 - adjustParalyticFrationVaccine) |
| * adjustEfficacyVaccine * adjustRecoverRateVaccine |
| * currentOPVstate.getV() / popCount; |
| // rate 10 |
| double IWtoR = (1 - adjustParalyticFractionWild) |
| * adjustRecoverRateWild * currentOPVstate.getI() / popCount; |
| // rate 11 |
| double IWtoPW = adjustParalyticFractionWild * adjustRecoverRateWild |
| * currentOPVstate.getI() / popCount; |
| //diseaseDeath |
| double diseaseDeath = adjustinfectiousMortalityRate * currentOPVstate.getI() / popCount; |
| |
| |
| double deltaS = -S0toEV - S0toEW; |
| double deltaSv = VtoSV - SVtoEV - SVtoEW; |
| double deltaE = SVtoEW + S0toEW - EWtoIW; |
| double deltaEv = SVtoEV + S0toEV - EVtoV; |
| double deltaV = EVtoV - VtoSV - VtoPV - VtoR - infectiousMortalityRate |
| * currentOPVstate.getV() / popCount; |
| double deltaI = EWtoIW - IWtoR - IWtoPW - infectiousMortalityRate |
| * currentOPVstate.getI() / popCount; |
| double deltaPv = VtoPV; |
| double deltaPw = IWtoPW; |
| double deltaR = VtoR + IWtoR; |
| //we use # of paralysis case caused by wild polio to trigger the intervention |
| //this is what used my Agent-based Model paper as well (Rahmandad & Hu, 2011) |
| double deltaIncident = IWtoPW; |
| |
| |
| StandardInterventionLabel scl = findInterventionLabel((Node) diseaseLabel |
| .getIdentifiable()); |
| if (scl != null) { |
| double vaccinations = ((StandardInterventionLabelValue) scl |
| .getCurrentValue()).getVaccinations(); |
| vaccinations *= ((double) timeDelta / (double) getTimePeriod()); |
| double availPopVaccine = popCount - currentOPVstate.getPv() |
| - currentOPVstate.getPw(); |
| |
| // calculate the proportion of vaccine that each compartment could |
| // be allocated |
| double vaccineS = vaccinations * currentOPVstate.getS() |
| / availPopVaccine; |
| double vaccineSv = vaccinations * currentOPVstate.getSv() |
| / availPopVaccine; |
| double vaccineEv = vaccinations * currentOPVstate.getEv() |
| / availPopVaccine; |
| double vaccineEw = vaccinations * currentOPVstate.getE() |
| / availPopVaccine; |
| double vaccineV = vaccinations * currentOPVstate.getV() |
| / availPopVaccine; |
| double vaccineI = vaccinations * currentOPVstate.getI() |
| / availPopVaccine; |
| double vaccineR = vaccinations * currentOPVstate.getR() |
| / availPopVaccine; |
| |
| // validate # of vaccine allocated to ppl in each compartment |
| if (currentOPVstate.getS() < vaccineS) |
| vaccineS = currentOPVstate.getS(); |
| if (currentOPVstate.getSv() < vaccineSv) |
| vaccineSv = currentOPVstate.getSv(); |
| if (currentOPVstate.getEv() < vaccineEv) |
| vaccineEv = currentOPVstate.getEv(); |
| if (currentOPVstate.getE() < vaccineEw) |
| vaccineEw = currentOPVstate.getE(); |
| if (currentOPVstate.getV() < vaccineV) |
| vaccineV = currentOPVstate.getV(); |
| if (currentOPVstate.getI() < vaccineI) |
| vaccineI = currentOPVstate.getI(); |
| if (currentOPVstate.getR() < vaccineR) |
| vaccineR = currentOPVstate.getR(); |
| |
| // ppl in E, I, R compartment would NOT move even though they got |
| // the vaccination, |
| // it is waste but hard to tell at which compartment an individual |
| // is in reality |
| // ppl in V compartment do NOT get any benefit from these immediate |
| // vaccination campaign because they did not wait enough time |
| // between each dose |
| deltaS -= vaccineS; |
| deltaSv -= vaccineSv; |
| deltaEv += (vaccineS + vaccineSv); |
| |
| /* |
| * //if it is the response to a detected outbreak, then we only have |
| * limited vaccine for Sv and So else { deltaS -= vaccinations; |
| * deltaSv -= vaccinations; deltaR += vaccinations; |
| * |
| * |
| * } |
| */ |
| |
| } |
| |
| // setDeltaValuetoStates |
| ret.setSv(deltaSv); |
| ret.setS(deltaS); |
| ret.setE(deltaE); |
| ret.setEv(deltaEv); |
| ret.setV(deltaV); |
| ret.setI(deltaI); |
| ret.setPv(deltaPv); |
| ret.setPw(deltaPw); |
| ret.setR(deltaR); |
| ret.setIncidence(deltaIncident); |
| ret.setDiseaseDeaths(diseaseDeath); |
| |
| return ret; |
| |
| } // computeTransitions |
| |
| /** |
| * @see org.eclipse.stem.diseasemodels.standard.impl.DiseaseModelImpl#createDiseaseModelLabel() |
| */ |
| @Override |
| public DiseaseModelLabel createDiseaseModelLabel(String populationIdentifier) { |
| return PolioFactory.eINSTANCE.createOpvLabel(); |
| } // createDiseaseModelLabel |
| |
| @Override |
| public DiseaseModelLabelValue createDiseaseModelLabelValue( |
| String populationIdentifier) { |
| return PolioFactory.eINSTANCE.createOpvLabelValue(); |
| } // createDiseaseModelLabelValue |
| |
| /** |
| * The default value of the '{@link #getReversionRate() |
| * <em>Reversion Rate</em>}' attribute. <!-- begin-user-doc --> <!-- |
| * end-user-doc --> |
| * |
| * @see #getReversionRate() |
| * @generated |
| * @ordered |
| */ |
| protected static final double REVERSION_RATE_EDEFAULT = 1.0E-4; |
| |
| /** |
| * The cached value of the '{@link #getReversionRate() |
| * <em>Reversion Rate</em>}' attribute. <!-- begin-user-doc --> <!-- |
| * end-user-doc --> |
| * |
| * @see #getReversionRate() |
| * @generated |
| * @ordered |
| */ |
| protected double reversionRate = REVERSION_RATE_EDEFAULT; |
| |
| /** |
| * The default value of the '{@link #getPartialSusceptibilityVaccine() |
| * <em>Partial Susceptibility Vaccine</em>}' attribute. <!-- begin-user-doc |
| * --> <!-- end-user-doc --> |
| * |
| * @see #getPartialSusceptibilityVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected static final double PARTIAL_SUSCEPTIBILITY_VACCINE_EDEFAULT = 0.0; |
| |
| /** |
| * The cached value of the '{@link #getPartialSusceptibilityVaccine() |
| * <em>Partial Susceptibility Vaccine</em>}' attribute. <!-- begin-user-doc |
| * --> <!-- end-user-doc --> |
| * |
| * @see #getPartialSusceptibilityVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected double partialSusceptibilityVaccine = PARTIAL_SUSCEPTIBILITY_VACCINE_EDEFAULT; |
| |
| /** |
| * The default value of the '{@link #getTransRateVaccine() |
| * <em>Trans Rate Vaccine</em>}' attribute. <!-- begin-user-doc --> <!-- |
| * end-user-doc --> |
| * |
| * @see #getTransRateVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected static final double TRANS_RATE_VACCINE_EDEFAULT = 1.0; |
| |
| /** |
| * The cached value of the '{@link #getTransRateVaccine() |
| * <em>Trans Rate Vaccine</em>}' attribute. <!-- begin-user-doc --> <!-- |
| * end-user-doc --> |
| * |
| * @see #getTransRateVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected double transRateVaccine = TRANS_RATE_VACCINE_EDEFAULT; |
| |
| /** |
| * The default value of the '{@link #getIncubRateVaccine() |
| * <em>Incub Rate Vaccine</em>}' attribute. <!-- begin-user-doc --> <!-- |
| * end-user-doc --> |
| * |
| * @see #getIncubRateVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected static final double INCUB_RATE_VACCINE_EDEFAULT = 1.0; |
| |
| /** |
| * The cached value of the '{@link #getIncubRateVaccine() |
| * <em>Incub Rate Vaccine</em>}' attribute. <!-- begin-user-doc --> <!-- |
| * end-user-doc --> |
| * |
| * @see #getIncubRateVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected double incubRateVaccine = INCUB_RATE_VACCINE_EDEFAULT; |
| |
| /** |
| * The default value of the '{@link #getInfectRecoveryRateVaccine() |
| * <em>Infect Recovery Rate Vaccine</em>}' attribute. <!-- begin-user-doc |
| * --> <!-- end-user-doc --> |
| * |
| * @see #getInfectRecoveryRateVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected static final double INFECT_RECOVERY_RATE_VACCINE_EDEFAULT = 22.81; |
| |
| /** |
| * The cached value of the '{@link #getInfectRecoveryRateVaccine() |
| * <em>Infect Recovery Rate Vaccine</em>}' attribute. <!-- begin-user-doc |
| * --> <!-- end-user-doc --> |
| * |
| * @see #getInfectRecoveryRateVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected double infectRecoveryRateVaccine = INFECT_RECOVERY_RATE_VACCINE_EDEFAULT; |
| |
| /** |
| * The default value of the '{@link #getParalyticFractionVaccine() |
| * <em>Paralytic Fraction Vaccine</em>}' attribute. <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * |
| * @see #getParalyticFractionVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected static final double PARALYTIC_FRACTION_VACCINE_EDEFAULT = 7.14E-7; |
| |
| /** |
| * The cached value of the '{@link #getParalyticFractionVaccine() |
| * <em>Paralytic Fraction Vaccine</em>}' attribute. <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * |
| * @see #getParalyticFractionVaccine() |
| * @generated |
| * @ordered |
| */ |
| protected double paralyticFractionVaccine = PARALYTIC_FRACTION_VACCINE_EDEFAULT; |
| |
| /** |
| * The default value of the '{@link #getParalyticFractionWild() |
| * <em>Paralytic Fraction Wild</em>}' attribute. <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * |
| * @see #getParalyticFractionWild() |
| * @generated |
| * @ordered |
| */ |
| protected static final double PARALYTIC_FRACTION_WILD_EDEFAULT = 0.0050; |
| |
| /** |
| * The cached value of the '{@link #getParalyticFractionWild() |
| * <em>Paralytic Fraction Wild</em>}' attribute. <!-- begin-user-doc --> |
| * <!-- end-user-doc --> |
| * |
| * @see #getParalyticFractionWild() |
| * @generated |
| * @ordered |
| */ |
| protected double paralyticFractionWild = PARALYTIC_FRACTION_WILD_EDEFAULT; |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated NOT |
| */ |
| public OralPolioVaccineModelImpl() { |
| super(); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| @Override |
| protected EClass eStaticClass() { |
| return PolioPackage.Literals.ORAL_POLIO_VACCINE_MODEL; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public double getEfficacyVaccine() { |
| return efficacyVaccine; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public void setEfficacyVaccine(double newEfficacyVaccine) { |
| double oldEfficacyVaccine = efficacyVaccine; |
| efficacyVaccine = newEfficacyVaccine; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl(this, Notification.SET, |
| PolioPackage.ORAL_POLIO_VACCINE_MODEL__EFFICACY_VACCINE, |
| oldEfficacyVaccine, efficacyVaccine)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public double getReversionRate() { |
| return reversionRate; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public void setReversionRate(double newReversionRate) { |
| double oldReversionRate = reversionRate; |
| reversionRate = newReversionRate; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl(this, Notification.SET, |
| PolioPackage.ORAL_POLIO_VACCINE_MODEL__REVERSION_RATE, |
| oldReversionRate, reversionRate)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public double getPartialSusceptibilityVaccine() { |
| return partialSusceptibilityVaccine; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public void setPartialSusceptibilityVaccine( |
| double newPartialSusceptibilityVaccine) { |
| double oldPartialSusceptibilityVaccine = partialSusceptibilityVaccine; |
| partialSusceptibilityVaccine = newPartialSusceptibilityVaccine; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl( |
| this, |
| Notification.SET, |
| PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARTIAL_SUSCEPTIBILITY_VACCINE, |
| oldPartialSusceptibilityVaccine, |
| partialSusceptibilityVaccine)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public double getTransRateVaccine() { |
| return transRateVaccine; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public void setTransRateVaccine(double newTransRateVaccine) { |
| double oldTransRateVaccine = transRateVaccine; |
| transRateVaccine = newTransRateVaccine; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl(this, Notification.SET, |
| PolioPackage.ORAL_POLIO_VACCINE_MODEL__TRANS_RATE_VACCINE, |
| oldTransRateVaccine, transRateVaccine)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public double getIncubRateVaccine() { |
| return incubRateVaccine; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public void setIncubRateVaccine(double newIncubRateVaccine) { |
| double oldIncubRateVaccine = incubRateVaccine; |
| incubRateVaccine = newIncubRateVaccine; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl(this, Notification.SET, |
| PolioPackage.ORAL_POLIO_VACCINE_MODEL__INCUB_RATE_VACCINE, |
| oldIncubRateVaccine, incubRateVaccine)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public double getInfectRecoveryRateVaccine() { |
| return infectRecoveryRateVaccine; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public void setInfectRecoveryRateVaccine(double newInfectRecoveryRateVaccine) { |
| double oldInfectRecoveryRateVaccine = infectRecoveryRateVaccine; |
| infectRecoveryRateVaccine = newInfectRecoveryRateVaccine; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl( |
| this, |
| Notification.SET, |
| PolioPackage.ORAL_POLIO_VACCINE_MODEL__INFECT_RECOVERY_RATE_VACCINE, |
| oldInfectRecoveryRateVaccine, infectRecoveryRateVaccine)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public double getParalyticFractionVaccine() { |
| return paralyticFractionVaccine; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public void setParalyticFractionVaccine(double newParalyticFractionVaccine) { |
| double oldParalyticFractionVaccine = paralyticFractionVaccine; |
| paralyticFractionVaccine = newParalyticFractionVaccine; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl( |
| this, |
| Notification.SET, |
| PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARALYTIC_FRACTION_VACCINE, |
| oldParalyticFractionVaccine, paralyticFractionVaccine)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public double getParalyticFractionWild() { |
| return paralyticFractionWild; |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| public void setParalyticFractionWild(double newParalyticFractionWild) { |
| double oldParalyticFractionWild = paralyticFractionWild; |
| paralyticFractionWild = newParalyticFractionWild; |
| if (eNotificationRequired()) |
| eNotify(new ENotificationImpl( |
| this, |
| Notification.SET, |
| PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARALYTIC_FRACTION_WILD, |
| oldParalyticFractionWild, paralyticFractionWild)); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| @Override |
| public Object eGet(int featureID, boolean resolve, boolean coreType) { |
| switch (featureID) { |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__EFFICACY_VACCINE: |
| return getEfficacyVaccine(); |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__REVERSION_RATE: |
| return getReversionRate(); |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARTIAL_SUSCEPTIBILITY_VACCINE: |
| return getPartialSusceptibilityVaccine(); |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__TRANS_RATE_VACCINE: |
| return getTransRateVaccine(); |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__INCUB_RATE_VACCINE: |
| return getIncubRateVaccine(); |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__INFECT_RECOVERY_RATE_VACCINE: |
| return getInfectRecoveryRateVaccine(); |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARALYTIC_FRACTION_VACCINE: |
| return getParalyticFractionVaccine(); |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARALYTIC_FRACTION_WILD: |
| return getParalyticFractionWild(); |
| } |
| return super.eGet(featureID, resolve, coreType); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| @Override |
| public void eSet(int featureID, Object newValue) { |
| switch (featureID) { |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__EFFICACY_VACCINE: |
| setEfficacyVaccine((Double) newValue); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__REVERSION_RATE: |
| setReversionRate((Double) newValue); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARTIAL_SUSCEPTIBILITY_VACCINE: |
| setPartialSusceptibilityVaccine((Double) newValue); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__TRANS_RATE_VACCINE: |
| setTransRateVaccine((Double) newValue); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__INCUB_RATE_VACCINE: |
| setIncubRateVaccine((Double) newValue); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__INFECT_RECOVERY_RATE_VACCINE: |
| setInfectRecoveryRateVaccine((Double) newValue); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARALYTIC_FRACTION_VACCINE: |
| setParalyticFractionVaccine((Double) newValue); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARALYTIC_FRACTION_WILD: |
| setParalyticFractionWild((Double) newValue); |
| return; |
| } |
| super.eSet(featureID, newValue); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| @Override |
| public void eUnset(int featureID) { |
| switch (featureID) { |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__EFFICACY_VACCINE: |
| setEfficacyVaccine(EFFICACY_VACCINE_EDEFAULT); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__REVERSION_RATE: |
| setReversionRate(REVERSION_RATE_EDEFAULT); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARTIAL_SUSCEPTIBILITY_VACCINE: |
| setPartialSusceptibilityVaccine(PARTIAL_SUSCEPTIBILITY_VACCINE_EDEFAULT); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__TRANS_RATE_VACCINE: |
| setTransRateVaccine(TRANS_RATE_VACCINE_EDEFAULT); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__INCUB_RATE_VACCINE: |
| setIncubRateVaccine(INCUB_RATE_VACCINE_EDEFAULT); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__INFECT_RECOVERY_RATE_VACCINE: |
| setInfectRecoveryRateVaccine(INFECT_RECOVERY_RATE_VACCINE_EDEFAULT); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARALYTIC_FRACTION_VACCINE: |
| setParalyticFractionVaccine(PARALYTIC_FRACTION_VACCINE_EDEFAULT); |
| return; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARALYTIC_FRACTION_WILD: |
| setParalyticFractionWild(PARALYTIC_FRACTION_WILD_EDEFAULT); |
| return; |
| } |
| super.eUnset(featureID); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| @Override |
| public boolean eIsSet(int featureID) { |
| switch (featureID) { |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__EFFICACY_VACCINE: |
| return efficacyVaccine != EFFICACY_VACCINE_EDEFAULT; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__REVERSION_RATE: |
| return reversionRate != REVERSION_RATE_EDEFAULT; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARTIAL_SUSCEPTIBILITY_VACCINE: |
| return partialSusceptibilityVaccine != PARTIAL_SUSCEPTIBILITY_VACCINE_EDEFAULT; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__TRANS_RATE_VACCINE: |
| return transRateVaccine != TRANS_RATE_VACCINE_EDEFAULT; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__INCUB_RATE_VACCINE: |
| return incubRateVaccine != INCUB_RATE_VACCINE_EDEFAULT; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__INFECT_RECOVERY_RATE_VACCINE: |
| return infectRecoveryRateVaccine != INFECT_RECOVERY_RATE_VACCINE_EDEFAULT; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARALYTIC_FRACTION_VACCINE: |
| return paralyticFractionVaccine != PARALYTIC_FRACTION_VACCINE_EDEFAULT; |
| case PolioPackage.ORAL_POLIO_VACCINE_MODEL__PARALYTIC_FRACTION_WILD: |
| return paralyticFractionWild != PARALYTIC_FRACTION_WILD_EDEFAULT; |
| } |
| return super.eIsSet(featureID); |
| } |
| |
| /** |
| * <!-- begin-user-doc --> <!-- end-user-doc --> |
| * |
| * @generated |
| */ |
| @Override |
| public String toString() { |
| if (eIsProxy()) |
| return super.toString(); |
| |
| StringBuffer result = new StringBuffer(super.toString()); |
| result.append(" (efficacyVaccine: "); //$NON-NLS-1$ |
| result.append(efficacyVaccine); |
| result.append(", reversionRate: "); //$NON-NLS-1$ |
| result.append(reversionRate); |
| result.append(", partialSusceptibilityVaccine: "); //$NON-NLS-1$ |
| result.append(partialSusceptibilityVaccine); |
| result.append(", transRateVaccine: "); //$NON-NLS-1$ |
| result.append(transRateVaccine); |
| result.append(", incubRateVaccine: "); //$NON-NLS-1$ |
| result.append(incubRateVaccine); |
| result.append(", infectRecoveryRateVaccine: "); //$NON-NLS-1$ |
| result.append(infectRecoveryRateVaccine); |
| result.append(", paralyticFractionVaccine: "); //$NON-NLS-1$ |
| result.append(paralyticFractionVaccine); |
| result.append(", paralyticFractionWild: "); //$NON-NLS-1$ |
| result.append(paralyticFractionWild); |
| result.append(')'); |
| return result.toString(); |
| } |
| |
| } // OralPolioVaccineModelImpl |
