| <?php require_once($_SERVER['DOCUMENT_ROOT'] . "/eclipse.org-common/system/app.class.php"); require_once($_SERVER['DOCUMENT_ROOT'] . "/eclipse.org-common/system/nav.class.php"); require_once($_SERVER['DOCUMENT_ROOT'] . "/eclipse.org-common/system/menu.class.php"); $App = new App(); $Nav = new Nav(); $Menu = new Menu(); include($App->getProjectCommon()); # All on the same line to unclutter the user's desktop' |
| require_once($_SERVER['DOCUMENT_ROOT'] . "/stem/functions.php"); |
| |
| #***************************************************************************** |
| # |
| # template.php |
| # |
| # Author: Yossi Mesika |
| # Date: 2009-07-19 |
| # |
| # Description: Main web page for STEM |
| # |
| # |
| #**************************************************************************** |
| |
| # |
| # Begin: page-specific settings. Change these. |
| $pageTitle = "STEM"; |
| $pageKeywords = "STEM"; |
| $pageAuthor = "James Kaufman, Stefan Edlund, Yossi Mesika"; |
| |
| # Add page-specific Nav bars here |
| # Format is Link text, link URL (can be http://www.someothersite.com/), target (_self, _blank), level (1, 2 or 3) |
| # $Nav->addNavSeparator("My Page Links", "downloads.php"); |
| # $Nav->addCustomNav("My Link", "mypage.php", "_self", 3); |
| # $Nav->addCustomNav("Google", "http://www.google.com/", "_blank", 3); |
| |
| |
| # End: page-specific settings |
| # |
| |
| |
| # Paste your HTML content between the EOHTML markers! |
| ob_start(); |
| ?> |
| |
| <div id="maincontent"> |
| <div id="midcolumn"> |
| |
| <h1><center>The Spatiotemporal Epidemiological Modeler (STEM) Project</center></h1> |
| |
| <div class="homeitem3col"> |
| <a name="about"></a> |
| <h3>About STEM</h3> |
| <div style="padding:3px;"> |
| <img alt="STEM Banner" src="/stem/images/STEM_SPLASH5_300.gif" style="float: right;width:300px;;height:172px"/> |
| <p>The Spatiotemporal Epidemiological Modeler (STEM) tool is designed to help scientists and public health |
| officials create and use spatial and temporal models of emerging infectious diseases. These models can aid |
| in understanding and potentially preventing the spread of such diseases. |
| </p> |
| <p> |
| Policymakers responsible for strategies to contain disease and prevent epidemics need an accurate understanding |
| of disease dynamics and the likely outcomes of preventive actions. In an increasingly connected world with extremely |
| efficient global transportation links, the vectors of infection can be quite complex. STEM facilitates the development |
| of advanced mathematical models, the creation of flexible models involving multiple populations (species) and |
| interactions between diseases, and a better understanding of epidemiology. |
| </p> |
| <p> |
| STEM is designed to make it easy for developers and researchers to plug in their choice of models. It comes with |
| a large number of existing compartment models and a new model building framework that allows users to rapidly extend existing models or to create entirely new models. |
| The model building framework provides a simple graphical users interface and automatically generates all of the model code and hot injects the code into STEM at runtime. |
| In many cases, no knowledge of Eclipse or Java is required. The STEM code generator even allows users to build models affected by changes in climate data. |
| </p> |
| <p> |
| Any STEM model can be run |
| either stochastically or deterministically - simply by switching between solver plugins. Users can choose between many different numerical solvers of ordinary differential equations |
| (including finite difference, Runge-Kutta, 4 solvers from The Apache Commons Mathematics Library, and Stochastic). The stochastic solver computes integer (individual) based |
| transitions picking randomly from a binomial distribution (also from Apach Math). Simulation results can be output with a choice of pluggable loggers, including delimiting files, video loggers, and map loggers. |
| STEM can be used to study quite complex models (for example a model of Dengue Fever with 51 differential equations) and can run global scale simulations. <a href="http://wiki.eclipse.org/index.php/STEM">Click here</a> for the complete STEM documentation. |
| </p><p> |
| <a href="./intro.php"> more.... </a> |
| </p> |
| </div> |
| </div> |
| |
| <div class="homeitem3col"> |
| <a name="status"></a> |
| <h3>Project Status</h3> |
| <div style="padding:3px;"> |
| <p><b><a href="downloads.php">Download latest build today</a> </b></p> |
| </div> |
| </div> |
| |
| <div class="homeitem3col"> |
| <a name="gettingstarted"/></a> |
| <h3>Getting Started</h3> |
| <div style="padding:3px;"> |
| <p> |
| <ul> |
| <li><a href="downloads.php">Download STEM!</a> (available for Windows, Linux and Mac)</li> |
| <li><a href="http://wiki.eclipse.org/Installation_Guide" title="Installation Guide">Installation Guide</a></li> |
| <li><a href="http://wiki.eclipse.org/STEM_FAQ">FAQ</a></li> |
| </ul> |
| </div> |
| </div> |
| |
| <div class="homeitem3col"> |
| <a name="resources"/></a> |
| <h3>Resources</h3> |
| <div style="padding:3px;"> |
| <p>STEM Project Resources</p> |
| <ul> |
| <li> |
| <a href="https://bugs.eclipse.org/bugs/buglist.cgi?query_format=advanced&short_desc_type=allwordssubstr&short_desc=&classification=Technology&product=STEM&long_desc_type=allwordssubstr&long_desc=&bug_file_loc_type=allwordssubstr&bug_file_loc=&status_whiteboard_type=allwordssubstr&status_whiteboard=&keywords_type=allwords&keywords=&emailtype1=substring&email1=&emailtype2=substring&email2=&bugidtype=include&bug_id=&votes=&chfieldfrom=&chfieldto=Now&chfieldvalue=&cmdtype=doit&order=Reuse+same+sort+as+last+time&field0-0-0=noop&type0-0-0=noop&value0-0-0=">Existing STEM Bugs</a> on <a href="https://bugs.eclipse.org/bugs/">Bugzilla</a>.<br/> |
| <a href="https://bugs.eclipse.org/bugs/enter_bug.cgi?product=STEM">Submit a new bug</a> |
| </li> |
| <li><a href="http://wiki.eclipse.org/Welcome_STEM_Developers">Developers Documentation</a> Guide</li> |
| <li><a href="http://www.eclipse.org/newsportal/thread.php?group=eclipse.stem">Newsgroup</a> |
| (See <a href="http://www.eclipse.org/newsgroups/">About the newsgroups</a> if you have access problems) |
| </li> |
| <li><a href="http://wiki.eclipse.org/index.php/STEM">Wiki</a></li> |
| <li><a href="http://wiki.eclipse.org/index.php/STEM_Source_Code">Access the STEM source code</a></li> |
| <li><a href="http://www.eclipse.org">Main Eclipse Foundation website</a></li> |
| <li><a href="http://www.eclipse.org/legal/privacy.php">Privacy policy</a></li> |
| <li><a href="http://www.eclipse.org/legal/termsofuse.php">Website terms of use</a></li> |
| <li><a href="http://www.eclipse.org/legal/copyright.php">Copyright agent</a></li> |
| <li><a href="http://www.eclipse.org/legal">Legal</a></li> |
| |
| </ul> |
| </div> |
| </div> |
| </div> |
| |
| |
| <div id="rightcolumn"> |
| <!--<div class="sideitem"> |
| <h6>Incubation</h6> |
| <div align="center"><a href="/projects/what-is-incubation.php"><img |
| align="center" src="/images/egg-incubation.png" |
| border="0" alt="Incubation" /></a></div> |
| </div>--> |
| <!--<div class="sideitem"> |
| <h6 style="color:red">Ebola News</h6> |
| <?php getRssFeed('https://dev.eclipse.org/mhonarc/lists/stem-ebola/maillist.rss', $_SERVER['DOCUMENT_ROOT'] . '/stem/data/rss_ebola_cache.xml'); ?> |
| <br.> |
| <i><a href="https://dev.eclipse.org/mhonarc/lists/stem-ebola/">more...</a></i> |
| </div> |
| --> |
| <div class="sideitem"> |
| <h6>News</h6> |
| <?php getRssFeed('http://www.eclipse.org/forums/rdf.php?mode=m&l=1&basic=1&frm=72&n=5', $_SERVER['DOCUMENT_ROOT'] . '/stem/data/rss_cache.xml'); ?> |
| <br.> |
| <i><a href="http://www.eclipse.org/forums/index.php?t=thread&frm_id=72">more...</a></i> |
| </div> |
| <div class="sideitem"> |
| <h6>Videos and presentations</h6> |
| <?php getData('/stem/data/videos.xml', 10); ?> |
| </div> |
| <div class="sideitem"> |
| <h6>Downloadable Scenarios</h6> |
| <?php getData('/stem/data/scenarios.xml', 4, 'images/icon-save.gif'); ?> |
| <br/> |
| <a href="http://www.eclipse.org/stem/downloads.php#DownloadableScenarios"> ...more Downloadable Scenarios</a> |
| </div> |
| <div class="sideitem"> |
| <h6>Recent Publications</h6> |
| <?php getData('/stem/data/pubs.xml', 10); ?> |
| <br.> |
| <i><a href="http://wiki.eclipse.org/Publications_and_Presentations_on_STEM"> ...more Publications</a></i> |
| </div> |
| <div class="sideitem"> |
| <h6>Upcoming (and recent) talks</h6> |
| <?php getData('/stem/data/talks.xml', 10); ?> |
| <i><a href="http://wiki.eclipse.org/Publications_and_Presentations_on_STEM"> ...more talks</a></i> |
| </div> |
| <div class="sideitem"> |
| <h6>Acknowledgements</h6> |
| <!-- <img alt="Development of STEM was supported in part by USAF/SG" src="/stem/images/usaf.gif" style="float: left;width:150px;"/> --> |
| <?php getData('/stem/data/acknowledgements.xml', 15); ?> |
| </div> |
| </div> |
| |
| </div> |
| |
| <?php |
| |
| $html .= ob_get_contents(); |
| ob_end_clean(); |
| |
| # Generate the web page |
| $App->generatePage($theme, $Menu, $Nav, $pageAuthor, $pageKeywords,$pageTitle, $html); |
| |
| ?> |