| <?php |
| |
| require_once ($_SERVER['DOCUMENT_ROOT'] . "/eclipse.org-common/system/app.class.php"); |
| require_once ($_SERVER['DOCUMENT_ROOT'] . "/eclipse.org-common/system/nav.class.php"); |
| require_once ($_SERVER['DOCUMENT_ROOT'] . "/eclipse.org-common/system/menu.class.php"); |
| $App = new App(); |
| $Nav = new Nav(); |
| $Menu = new Menu(); |
| $theme = "Nova"; |
| include ($App->getProjectCommon()); // All on the same line to unclutter the user's desktop' |
| require_once ($_SERVER['DOCUMENT_ROOT'] . "/stem/functions.php"); |
| |
| // ***************************************************************************** |
| // |
| // template.php |
| // |
| // Author: Yossi Mesika |
| // Date: 2009-07-19 |
| // |
| // Description: Main web page for STEM |
| // |
| // |
| // **************************************************************************** |
| |
| // |
| // Begin: page-specific settings. Change these. |
| $pageTitle = "STEM"; |
| $pageKeywords = "STEM"; |
| $pageAuthor = "James Kaufman, Stefan Edlund, Yossi Mesika"; |
| |
| // Add page-specific Nav bars here |
| // Format is Link text, link URL (can be http://www.someothersite.com/), target (_self, _blank), level (1, 2 or 3) |
| // $Nav->addNavSeparator("My Page Links", "downloads.php"); |
| // $Nav->addCustomNav("My Link", "mypage.php", "_self", 3); |
| // $Nav->addCustomNav("Google", "http://www.google.com/", "_blank", 3); |
| |
| // End: page-specific settings |
| // |
| |
| // Paste your HTML content between the EOHTML markers! |
| ob_start(); |
| ?> |
| |
| <style> |
| h1 {text-align:center;} |
| </style> |
| |
| <div id="maincontent" style="width:1000px" > |
| <div id="midcolumn"> |
| |
| <h1>The Spatiotemporal Epidemiological Modeler (STEM) Project</h1> |
| |
| <div class="homeitem3col"> |
| <a id ="about"></a> |
| <h3>About STEM</h3> |
| <div style="padding: 3px;"> |
| <img alt="STEM Banner" src="/stem/images/STEM_SPLASH5_300.gif" |
| style="float: right; width: 300px;; height: 172px" /> |
| <p>The Spatiotemporal Epidemiological Modeler (STEM) tool is |
| designed to help scientists and public health officials create and |
| use spatial and temporal models of emerging infectious diseases. |
| These models can aid in understanding and potentially preventing |
| the spread of such diseases.</p> |
| <p>Policymakers responsible for strategies to contain disease and |
| prevent epidemics need an accurate understanding of disease |
| dynamics and the likely outcomes of preventive actions. In an |
| increasingly connected world with extremely efficient global |
| transportation links, the vectors of infection can be quite |
| complex. STEM facilitates the development of advanced mathematical |
| models, the creation of flexible models involving multiple |
| populations (species) and interactions between diseases, and a |
| better understanding of epidemiology.</p> |
| <p>STEM is designed to make it easy for developers and researchers |
| to plug in their choice of models. It comes with a large number of |
| existing compartment models and a new model building framework that |
| allows users to rapidly extend existing models or to create |
| entirely new models. The model building framework provides a simple |
| graphical users interface and automatically generates all of the |
| model code and hot injects the code into STEM at runtime. In many |
| cases, no knowledge of Eclipse or Java is required. The STEM code |
| generator even allows users to build models affected by changes in |
| climate data.</p> |
| <p> |
| Any STEM model can be run either stochastically or |
| deterministically - simply by switching between solver plugins. |
| Users can choose between many different numerical solvers of |
| ordinary differential equations (including finite difference, |
| Runge-Kutta, 4 solvers from The Apache Commons Mathematics Library, |
| and Stochastic). The stochastic solver computes integer |
| (individual) based transitions picking randomly from a binomial |
| distribution (also from Apach Math). Simulation results can be |
| output with a choice of pluggable loggers, including delimiting |
| files, video loggers, and map loggers. STEM can be used to study |
| quite complex models (for example a model of Dengue Fever with 51 |
| differential equations) and can run global scale simulations. <a |
| href="http://wiki.eclipse.org/index.php/STEM">Click here</a> for |
| the complete STEM documentation. |
| </p> |
| <p> |
| <a href="./intro.php"> more.... </a> |
| </p> |
| </div> |
| </div> |
| |
| <div class="homeitem3col"> |
| <a id="status"></a> |
| <h3>Project Status</h3> |
| <div style="padding: 3px;"> |
| <p> |
| <b><a href="downloads.php">Download latest build today</a> </b> |
| </p> |
| </div> |
| </div> |
| |
| <div class="homeitem3col"> |
| <a id="gettingstarted" /></a> |
| <h3>Getting Started</h3> |
| <div style="padding: 3px;"> |
| <p> |
| |
| |
| <ul> |
| <li><a href="downloads.php">Download STEM!</a> (available for |
| Windows, Linux and Mac)</li> |
| <li><a href="http://wiki.eclipse.org/Installation_Guide" |
| title="Installation Guide">Installation Guide</a></li> |
| <li><a href="http://wiki.eclipse.org/STEM_FAQ">FAQ</a></li> |
| </ul> |
| </div> |
| </div> |
| |
| <div class="homeitem3col"> |
| <a id="resources" /></a> |
| <h3>Resources</h3> |
| <div style="padding: 3px;"> |
| <p>STEM Project Resources</p> |
| <ul> |
| <li><a |
| href="https://bugs.eclipse.org/bugs/buglist.cgi?query_format=advanced&short_desc_type=allwordssubstr&short_desc=&classification=Technology&product=STEM&long_desc_type=allwordssubstr&long_desc=&bug_file_loc_type=allwordssubstr&bug_file_loc=&status_whiteboard_type=allwordssubstr&status_whiteboard=&keywords_type=allwords&keywords=&emailtype1=substring&email1=&emailtype2=substring&email2=&bugidtype=include&bug_id=&votes=&chfieldfrom=&chfieldto=Now&chfieldvalue=&cmdtype=doit&order=Reuse+same+sort+as+last+time&field0-0-0=noop&type0-0-0=noop&value0-0-0=">Existing |
| STEM Bugs</a> on <a href="https://bugs.eclipse.org/bugs/">Bugzilla</a>.<br /> |
| <a href="https://bugs.eclipse.org/bugs/enter_bug.cgi?product=STEM">Submit |
| a new bug</a></li> |
| <li><a href="http://wiki.eclipse.org/Welcome_STEM_Developers">Developers |
| Documentation</a> Guide</li> |
| <li><a |
| href="http://www.eclipse.org/newsportal/thread.php?group=eclipse.stem">Newsgroup</a> |
| (See <a href="http://www.eclipse.org/newsgroups/">About the |
| newsgroups</a> if you have access problems)</li> |
| <li><a href="http://wiki.eclipse.org/index.php/STEM">Wiki</a></li> |
| <li><a href="http://wiki.eclipse.org/index.php/STEM_Source_Code">Access |
| the STEM source code</a></li> |
| <li><a href="http://www.eclipse.org">Main Eclipse Foundation |
| website</a></li> |
| <li><a href="http://www.eclipse.org/legal/privacy.php">Privacy |
| policy</a></li> |
| <li><a href="http://www.eclipse.org/legal/termsofuse.php">Website |
| terms of use</a></li> |
| <li><a href="http://www.eclipse.org/legal/copyright.php">Copyright |
| agent</a></li> |
| <li><a href="http://www.eclipse.org/legal">Legal</a></li> |
| |
| </ul> |
| </div> |
| </div> |
| </div> |
| |
| <div id="rightcolumn"> |
| <div class="sideitem"> |
| <h6>News</h6> |
| <?php getRssFeed('http://www.eclipse.org/forums/rdf.php?mode=m&l=1&basic=1&frm=72&n=5', $_SERVER['DOCUMENT_ROOT'] . '/stem/data/rss_cache.xml'); ?> |
| <br> <i><a href="http://www.eclipse.org/forums/index.php?t=thread&frm_id=72">more...</a></i> |
| |
| </div> |
| <div class="sideitem"> |
| <h6>Videos and presentations</h6> |
| <?php getData('/stem/data/videos.xml', 10); ?> |
| </div> |
| <div class="sideitem"> |
| <h6>Downloadable Scenarios</h6> |
| <?php getData('/stem/data/scenarios.xml', 4, 'images/icon-save.gif'); ?> |
| <br /> <a href="http://www.eclipse.org/stem/downloads.php#DownloadableScenarios"> |
| ...more Downloadable Scenarios</a> |
| </div> |
| <div class="sideitem"> |
| <h6>Recent Publications</h6> |
| <?php getData('/stem/data/pubs.xml', 10); ?> |
| <br> <i><a href="http://wiki.eclipse.org/Publications_and_Presentations_on_STEM"> |
| ...more Publications</a></i> |
| |
| </div> |
| <div class="sideitem"> |
| <h6>Upcoming (and recent) talks</h6> |
| <?php getData('/stem/data/talks.xml', 10); ?> |
| <i><a href="http://wiki.eclipse.org/Publications_and_Presentations_on_STEM"> |
| ...more talks</a></i> |
| </div> |
| <div class="sideitem"> |
| <h6>Acknowledgements</h6> |
| <!-- <img alt="Development of STEM was supported in part by USAF/SG" src="/stem/images/usaf.gif" style="float: left;width:150px;"/> --> |
| <?php getData('/stem/data/acknowledgements.xml', 15); ?> |
| </div> |
| </div> |
| |
| </div> |
| |
| <?php |
| |
| $html .= ob_get_contents(); |
| ob_end_clean(); |
| |
| // Generate the web page |
| $App->generatePage($theme, $Menu, $Nav, $pageAuthor, $pageKeywords, $pageTitle, $html); |
| |
| ?> |